G27360 (anks1b)


Basic Information

Item Value
gene id G27360
gene name anks1b
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9163147 ~ 9227212 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40535
CTGGGCAGCAGGCGAATAGCCTGAAGAAGCCGCTGTCTGTGGGCAGAGTTTAAAATCCCGATCTCTAGCAGGTCCTGGTCCTCCACAACATTACTAccctaCATGAACTGAACGTTGTCGAAGCCGTTAGACAGCAGGTGGTTTTCGTACTGCACGAGACCGATGTTGTCCAGCCACTGTCCCACGGACTGGACGGGGCAGCGGGGGCCTATCAAGGGGTGCAGAGGGAGGCGTTTGAGAAGTGAGTAGCCATCCACCCGGTAGCAGCGACAGTCCGGCTGCGAGAGCTGGCACTGCCACATCATGTTCCTTGCAAAGTGACTGTCAAACGAACCCGCCATGCTCAACAAGCCACGGAGAGCGCGAGTGGAAGCggggagagacagaaagagcgAGAAAAAGGAGGTAGGAAAGTGATTTCAagccacagaagaaagtaatgTTCAGAAAGCAGCCAAGAGAGGGAGgaaagcagaaagagagagcaaatTAGAAGAAGAGGTCCTCTCAGGAGAGCGAGCGTTAGGGTCCGTGCTGGTGGAGAAACACGCCGGCTGTGGAGGTAGACATGCTGAAGGCTCCAAATTACATCCACAAGAGAGAGATGCGCATTACCGACTCTGTGCTGCTCAACCTGTGTCTCAACGTGTGGAGAGTGCaggcatgtgcgtgtgtgtgtgtgcgcgtgcgggAGGCAACGAGCGAGTGTGCGCGAAAGAGGATAGGAATGACAGCGTGCAGCTTGCTTGGTAGATTTCTGTTTCTCCAGCACTCCCACACTCATTTGTATGCCTCTGCATCCTGTGCCACTGtgcgctctctctccctccctctcggTCTCTCAGGCTCCCTCCCTTCTTTCCACTAGCTGTACCTCACATTGCCGATAATAGCCATCAGATCAACCCCAGCCTCTTTGTCTGAGTGCAGAAGCTGCTGTTGCTCcctcccacacacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacacactcacacactcacacacactcacacacactcaaacacactcaaacacacacacacacacacacactctgtgggCGTCTGTGAGCACTGGTGGAATGGCAACACAAATGGGCTTTCTGTGGACGGGAAAAAATGAGGGACCActgcagaggagaggagaggcaAAAGTAAAGGAGAGGTgaggaaaggaaaggagaaaagGAGGTGAAAGAAGGGGTGAAGGGAGGAAACGGGAAGGCAAAGGCAAAACAATAAGAAGCGAGATAAAAGGTGACAATTGagaggagaaacagagagagaggaggagaggtaAAGTGAAGGCAGTGAATGAAATGGTGCAGAGTTGAGTGAAAGTGATGAAAGTGGAGATAAGAGGACAGGTGAGGGGAGATTAAAGGAGAGAAGGTGAAATGAGAGGGAGAGGACAGGAAAAGTGAAAGATGAAGAGAAAGTAGAGGAGAGCAATATTAGGTGGTGCAAATGAGAGGAGAGGCAAACAGTGCAAGGGACAGGTGAAATGAgcaggagaggagaggagaggagaggagaaagtAGGCAAAAGTTATAATAGAAGAAGAGAAAGCATTAGGTAAGAGGTTGGAGAGGGGACAGAAGATGAAAGGAGAGGCAAagagaagtgagagaaaacaatGAGAGGAGGCAACAGAAGACCAATGGGAGCATACAGAggaaagaaggagagagaaaaggaggtaagaaaagaagagaggaaGGGATGGGAGAAACAAAAGAAGAGTCAAAGGGATAGGGgagaggaggtgagaggaagaggaagacgtGAGATGAGAAAATGAGAGGAGGCAAAACAGGAGGAGAAAGGACTGAAGATGAGTGTAGAAGATATGAGGCAAGAGGACAGGAAACAGAAGACAGTGCTGTTGTATTCATTACTTGCTCAAGCGATTTGATTTTCGCTATTGATCATCGCTGAGGCACTCTTAGTACACTGATCTCCAGACAATTGCTCGCGCTGTCCCAAGACTTGTGCTCAGAGTCTAAACTGTCCATCCACTTCCTGTCCCCCTGCTCTCATTATGACTACAGGAAGAGCACAGTGACGAGAGGAGAGCGCACGGTAACCATGGTTACATCTCAAAAAGCTCCCTGTCTATGAGCGGGTCTTTGACACTACTGAAGGAAACCCTCCTGTCTCACAGTGCTGCACACTTCACAGCcgttatttaatattcatatcaTGCCGTGAGCTCCCTATAGTTATGAATATACGTTAAATGTAGAGGGATGACTGACTATATGCGtcaacaccacacacacacagagacacacaaacctGAGTGATCCTCCGTAATCCCCTCCAACTCTGTGCCAATTCCAGCACCTATGGAGCTCATAATCTTGTC
>TU40536
acacacacactcacacacacacacacactcacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacactctgtgggCGTCTGTGAGCACTGGTGGAATGGCAACACAAATGGGCTTTCTGTGGACGGGAAAAAATGAGGGACCActgcagaggagaggagaggcaAAAGTAAAGGAGAGGTgaggaaaggaaaggagaaaagGAGGTGAAAGAAGGGGTGAAGGGAGGAAACGGGAAGGCAAAGGCAAAACAATAAGAAGCGAGATAAAAGGTGACAATTGagaggagaaacagagagagaggaggagaggtaAAGTGAAGGCAGTGAATGAAATGGTGCAGAGTTGAGTGAAAGTGATGAAAGTGGAGATAAGAGGACAGGTGAGGGGAGATTAAAGGAGAGAAGGTGAAATGAGAGGGAGAGGACAGGAAAAGTGAAAGATGAAGAGAAAGTAGAGGAGAGCAATATTAGGTGGTGCAAATGAGAGGAGAGGCAAACAGTGCAAGGGACAGGTGAAATGAgcaggagaggagaggagaggagaggagaaagtAGGCAAAAGTTATAATAGAAGAAGAGAAAGCATTAGGTAAGAGGTTGGAGAGGGGACAGAAGATGAAAGGAGAGGCAAagagaagtgagagaaaacaatGAGAGGAGGCAACAGAAGACCAATGGGAGCATACAGAggaaagaaggagagagaaaaggaggtaagaaaagaagagaggaaGGGATGGGAGAAACAAAAGAAGAGTCAAAGGGATAGGGgagaggaggtgagaggaagaggaagacgtGAGATGAGAAAATGAGAGGAGGCAAAACAGGAGGAGAAAGGACTGAAGATGAGTGTAGAAGATATGAGGCAAGAGGACAGGAAACAGAAGACAGTGCTGTTGTATTCATTACTTGCTCAAGCGATTTGATTTTCGCTATTGATCATCGCTGAGGCACTCTTAGTACACTGATCTCCAGACAATTGCTCGCGCTGTCCCAAGACTTGTGCTCAGAGTCTAAACTGTCCATCCACTTCCTGTCCCCCTGCTCTCATTATGACTACAGGAAGAGCACAGTGACGAGAGGAGAGCGCACGGTAACCATGGTTACATCTCAAAAAGCTCCCTGTCTATGAGCGGGTCTTTGACACTACTGAAGGAAACCCTCCTGTCTCACAGTGCTGCACACTTCACAGCcgttatttaatattcatatcaTGCCGTGAGCTCCCTATAGTTATGAATATACGTTAAATGTAGAGGGATGACTGACTATATGCGtcaacaccacacacacacagagacacacaaacctGAGTGATCCTCCGTAATCCCCTCCAACTCTGTGCCAATTCCAGCACCTATGGAGCTCATAATCTTGTC
>TU40537
CTGGGCAGCAGGCGAATAGCCTGAAGAAGCCGCTGTCTGTGGGCAGAGTTTAAAATCCCGATCTCTAGCAGGTCCTGGTCCTCCACAACATTACTAccctaCATGAACTGAACGTTGTCGAAGCCGTTAGACAGCAGGTGGTTTTCGTACTGCACGAGACCGATGTTGTCCAGCCACTGTCCCACGGACTGGACGGGGCAGCGGGGGCCTATCAAGGGGTGCAGAGGGAGGCGTTTGAGAAGTGAGTAGCCATCCACCCGGTAGCAGCGACAGTCCGGCTGCGAGAGCTGGCACTGCCACATCATGTTCCTTGCAAAGTGACTGTCAAACGAACCCGCCATGCTCAACAAGCCACGGAGAGCGCGAGTGGAAGCggggagagacagaaagagcgAGAAAAAGGAGGTAGGAAAGTGATTTCAagccacagaagaaagtaatgTTCAGAAAGCAGCCAAGAGAGGGAGgaaagcagaaagagagagcaaatTAGAAGAAGAGGTCCTCTCAGGAGAGCGAGCGTTAGGGTCCGTGCTGGTGGAGAAACACGCCGGCTGTGGAGGTAGACATGCTGAAGGCTCCAAATTACATCCACAAGAGAGAGATGCGCATTACCGACTCTGTGCTGCTCAACCTGTGTCTCAACGTGTGGAGAGTGCaggcatgtgcgtgtgtgtgtgtgcgcgtgcgggAGGCAACGAGCGAGTGTGCGCGAAAGAGGATAGGAATGACAGCGTGCAGCTTGCTTGGTAGATTTCTGTTTCTCCAGCACTCCCACACTCATTTGTATGCCTCTGCATCCTGTGCCACTGtgcgctctctctccctccctctcggTCTCTCAGGCTCCCTCCCTTCTTTCCACTAGCTGTACCTCACATTGCCGATAATAGCCATCAGATCAACCCCAGCCTCTTTGTCTGAGTGCAGAAGCTGCTGTTGCTCcctcccacacacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacgcacacactcacacaca
>TU40539
AGGAGACACTCACCATGAACTGAACGTTGTCGAAGCCGTTAGACAGCAGGTGGTTTTCGTACTGCACGAGACCGATGTTGTCCAGCCACTGTCCCACGGACTGGACGGGGCAGCGGGGGCCTATCAAGGGGTGCAGAGGGAGGCGTTTGAGAAGTGAGTAGCCATCCACCCGGTAGCAGCGACAGTCCGGCTGCGAGAGCTGGCACTGCCACATCATGTTCCTTGCAAAGTGACTGTCAAACGAACCCGCCATGCTCAACAAGCCACGGAGAGCGCGAGTGGAAGCggggagagacagaaagagcgAGAAAAAGGAGGTAGGAAAGTGATTTCAagccacagaagaaagtaatgTTCAGAAAGCAGCCAAGAGAGGGAGgaaagcagaaagagagagcaaatTAGAAGAAGAGGTCCTCTCAGGAGAGCGAGCGTTAGGGTCCGTGCTGGTGGAGAAACACGCCGGCTGTGGAGGTAGACATGCTGAAGGCTCCAAATTACATCCACAAGAGAGAGATGCGCATTACCGACTCTGTGCTGCTCAACCTGTGTCTCAACGTGTGGAGAGTGCaggcatgtgcgtgtgtgtgtgtgcgcgtgcgggAGGCAACGAGCGAGTGTGCGCGAAAGAGGATAGGAATGACAGCGTGCAGCTTGCTTGGTAGATTTCTGTTTCTCCAGCACTCCCACACTCATTTGTATGCCTCTGCATCCTGTGCCACTGtgcgctctctctccctccctctctctctctctctctctctctgt

Function

symbol description
anks1b Predicted to act upstream of or within regulation of synaptic plasticity by receptor localization to synapse. Predicted to be located in cytoplasm. Orthologous to human ANKS1B (ankyrin repeat and sterile alpha motif domain containing 1B).

NR:

description
ankyrin repeat and sterile alpha motif domain-containing protein 1B isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40535 True 2394 lncRNA 0.50 2 9168776 9178649
TU40536 False 1419 lncRNA 0.47 2 9163147 9178649
TU40537 False 1028 TUCP 0.55 3 9168776 9182232
TU40539 False 768 lncRNA 0.55 2 9176344 9227212

Neighbor

gene id symbol gene type direction distance location
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 121291 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 147891 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 192553 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 201914 8953947 ~ 8961233 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 297229 8855404 ~ 8865918 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 90368 9317580 ~ 9323622 (+)
LOC122343440 NA coding downstream 97688 9324900 ~ 9333048 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 128755 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 318473 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 329617 9556829 ~ 9576961 (+)
LOC122343257 NA non-coding upstream 64169 9088755 ~ 9098978 (+)
LOC122342713 NA non-coding upstream 81281 9078018 ~ 9081866 (+)
G27352 NA non-coding upstream 87011 9068931 ~ 9076136 (+)
G27347 LOC107590965,LOC107695883 non-coding upstream 104855 9057868 ~ 9058292 (+)
G27345 NA non-coding upstream 105850 9054021 ~ 9057297 (+)
LOC122343448 NA non-coding downstream 120015 9347227 ~ 9351206 (+)
G27397 NA non-coding downstream 129154 9356366 ~ 9356870 (+)
G27404 NA non-coding downstream 258081 9485293 ~ 9485655 (+)
G27405 NA non-coding downstream 260149 9487361 ~ 9487576 (+)
G27406 NA non-coding downstream 261858 9489070 ~ 9489692 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 144814 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 272971 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 615145 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 671209 8487911 ~ 8491938 (+)
stmp1 NA other upstream 679316 8482890 ~ 8483831 (+)
cfap54 cfap54,LOC107695893 other downstream 154330 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 276868 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 350103 9577315 ~ 9578574 (+)
G27490 NA other downstream 360107 9587319 ~ 9590318 (+)
G27629 NA other downstream 930947 10158159 ~ 10257553 (+)

Expression


Co-expression Network