LOC122343448


Basic Information

Item Value
gene id LOC122343448
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9347227 ~ 9351206 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40575
AGGGTGATAGAGAGCCGCCCACGCACAGCCTCTAGGGAACAGCAAGCTGTGTTGTATCTCTGGAAAATTCCATGAAATCTCACAATAAACCCTGCTTTTCAACAAGCGTGACGTCACAGGACCGGGCTTGTTTATGTGAAGTTAAAAAGAGGGTAAGTCACAGGCGTGTGAatcaacataatataaaatagaaaccGGAGAATTTCACGTCTAACCTCACATAAACCTGCAGGACACCATCACAATGTGACATTAATGTTCCCGTTTCCTCTTGAGGAGAGATGGAGGCAGCAAAGGAGGGTTCACTGAGGACGTTTAGGCTTGATACAGATCTGCTGCCCAGAGGAAGGGATTCCAGTTGGAAACTGAAAATGCTGCAGACTGAAAGATAAGAATACACCTCTTTCTAGTGGGAATGTCCGGTCGAAAATATGCGGCTTATGTTTGTacatctaaagaaaaaaaagaatggaatGAATAATTAAGTTCATGCAGGAAAATACATCTTGTGTGGAAAGTATACAAACTGACACAAAGCTATCaatgtgcattaaataatattaagttATTTCTAATgtcaatgtttaattttaaaagtacataattTTAGTGTGTATAACtatgtatataaaacaaaaatactattattacataaaattaatttataaaattaacacacacacatatgtacatgtgcatatgtatatacattttacacatttatatactttttatatataattaattttatttatatagaacattatattttgtagcattattACTATTctatatactaaaaatattacaataatttaaaaaaagaaatgtatgtgtCTGGTCGGCTCTGGCCTGACAAAATTAGTTTTCAGTGATATTATCCcttccacaaaaaaaacagcttttcttgGGTAAACTTTGCCATTTCTAATACATTGCATCGCGTTTTGCACTGTATATCTCAGCAGAAACATGAGCAGGGGGAAGTACAAATGTGAAGTGACTTTGCcagcaattatttttttttctgatgactGACACAATCAGTTGAAGTCATTAATCCAGCTCCACATAAATCAGAATGTCAGCAATGCATCCAGACACAAACTCACTCTCTTGTCGATATGCCTAGACAAGCAACTTGAGACAGATGGTTTTGTGTTATGAAATGTTCTAATGGAGCGTAAATCTAAGACCTGTTAATTGTCTTTAACAGACCCCATGTGTAAGCCTTGGCTTTGGGCGCGTGAGCAAAAAGCGATCTTGTGTGGCTAAACGGGCCGCCGACTCTCGACATCTGATCTCGATAAACCTCCCAATCATCTCCAAACTGCACCAGCGCGAGAGTGTCATCTCTGTTCGTCGATACAAAACATTCTTAACAGATGCAGCGCATCAAATAGTCGGTCTAATGTGCGGCGTCCAGCTGGAACGGCCGAGCGCTGCAGCCCGCTTCCACATTCTGACAGGAAGACTCGCCTCAAGCCAACGTTCCTGGAAATCAGACTGTACTAGAGACGGGTGGAGGGAACGGAGGAGGAGAGTCAACGCGGTGTTACAACAAAACCAAGCGAACGGCACCGCGCTGCCTTGtttcaaaagcaaattattaaaagtgCCTTCCTGCATTCGTCCGTGGGCGAGGCAGAGAGGCGGCAAGTCACATGAGGAGAAGAGTTTGGCTTAGCCCACACTAATGTGATTGTTACTAGGAACATTCTTGCTCGCTATTATTAATTACCTAGCGTACACGTTTTGTACGCTTCAAACGTTCGGTTAAGCATGTTTCGCGAAAATAATGGCCCACTCGCTGAATGGATTTTTGCTTAGAGGTCGGCCCCACGTGTTACGATGACTTCACTGTTATTACGTCCTGGAATGATGCAGCTTTATATATAAGAAATTagaaattaagcattttattcTGCGGGGATAcgtttaattaataaagttatattggttcaatattatataaatattacacggatttctgaaagataatATAACACTGGACTTATTCTTGTGGCTTCccaagaataaattaaatattaa
>XR_006250779.1
tatcaagaaagaaaaaaaaaaattcgaaCTCATTTTCTTCTGTTCCCGTGTACACGTCATTGTTTTCGTCCCAAGAGAATAgagatgtgttttatttgagcAGCGGGGATGAATGGAGCAAAGGTCGGTTTGTGAGTTTGTTTTGAGTGTTCCCAAATTCTTCACAAAATCAAGGACGTCCATTGATTTCTGTCGTCAAGAGACAAGGGCCGGCCACACCAGGCCACGACAATAACAACTCTCTATCTCTAAGGCAGGACATTTGAGCAGAATCTAACATTCTTGCAATGGATATTTCATAAATTCTTTCCTATAATCTCCCATAAGAATCCGGGTTgttcagaaacatttaaaaacactcatGATATTTGGCGTGAAATTGCCCGTTTCAGATTTAACGGGAGCAGAAAagcactcaaaaaaaaaaaaagtgcagtaaTTCTCTGCCACGGATTTGGACACTTTGCAGTAGTTTTTCACAGCTTTAAAGCTTCTAGACCCCCGAGACAAAGAAGATTAGTGTGTTGAGGTGGCCCAACCATCAGCAATAAACACCGCAAAGAGGATTTCGTACAGCGAGTGCTGGTTTAGTAAACAGGGGTGAGCTGGTAAAGATCCAGCAGAGCCATAAGATGTCTGTGGCAAGTCTTTATCAGATTAATGGCACATGGTGGTGGGGGTACACAAAGGGAAAGGGGAAAAAGACAGTCGGagacaaagcaaagcaaacttacaaaaaataaataagtacaaaattCATTCTGACAAGAAAATTGCACGGATTTCAACTGTGGTTTAATAAGCGaataatttgattcatttagtTCATTCAGTAAAGGGATACTTTAGAAGGACCCATTCTGTGTTTGCTTTCGTGCGCAGGTTTGCCCCTGCACTACATTTATTCGCAGGCATATTTATCAccactgcttatttaattctgcCAACGGAAATGTCTGACACTGTATCGGTGACCGAGAAAAATTAGCATTTGAGTGACATTTTGAGAATCAGCcttaaaaattttacaaaattagaCACAAATCAGTTATGTTATGTGAAATGTGTTATAGCGCAGTCTCGATTAAAgttgaaaaagattttttttttaaatgcaaaaagtcAAGTAAAAAGGGGTTTTATATACACTTGGAATTCTgaacactaaataaatatgttaaataaacgctaaatgtataaaaacaacgTGCCgaaaagaaagaacgaaaacagagagagagggtgcTCTGAAAAGAACATTGCCTGGGTTTCGGCGAAATGCTTAACTTTTCTAagaattgtttcttttttataggATGGAGCATTCCAGCTTCAATTTCCATGCGTACATGTGGACACTTAACTCCAGATTGCTGGAGGGAACAGATTGTGCACTTTAAGAACGTGAAGTATGCAGAAGCCTTGATCTGAGGGGACAGTTACACTACCTTACTCTCAAGAGGCCTTAAAGAGACATGAAGCTCTGATGTACAATATGTACAGCCCATCCGTCACACTTTCGTTGGAAGAAGTGTCCGTGAGTTCGCGTATAACAGCGGAAAGTGTTTACATAATGAATTAAACGTCCCCGAGAGGGGATGCGGTAAATTTGAAGGACTAAGAATACGTTTTGGGttgttgttggggttttttttccaaaaaaagagaTACGAACACGGACGTGAGCGAGCATGCATTTGTGTGAGAATTTGAATTTCCTAAAACGGGTCGCTCGGTCTCTCTAGGAAAAGTAAATTTGTTAATTTTGGGCAGGGTGATAGAGAGCCGCCCACGCACAGCCTCTAGGGAACAGCAAGCTGTGTTGTATCTCTGGAAAATTCCATGAAATCTCACAATAAACCCTGCTTTTCAACAAGCGTGACGTCACAGGACCGGGCTTGTTTATGTGAAGTTAAAAAGAGGGACACCATCACAATGTGACATTAATGTTCCCGTTTCCTCTTGAGGAGAGATGGAGGCAGCAAAGGAGGGTTCACTGAGGACGTTTAGGCTTGATACAGATCTGCTGCCCAGAGGAAGGGATTCCAGTTGGAAACTGAAAATGCTGCAGACTGAAAGATAAGAATACACCTCTTTCTAGTGGGAATGTCCGGTCGAAAATATGCGGCTTATGTTTGTacatctaaagaaaaaaaagaatggaatGAATAATTAAGTTCATGCAGGAAAATACATCTTGTGTGGAAAGTATACAAACTGACACAAAGCTATCaatgtgcattaaataatattaagttATTTCTAATgtcaatgtttaattttaaaagtacataattTTAGTGTGTATAACtatgtatataaaacaaaaatactattattacataaaattaatttataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40575 False 2052 lncRNA 0.39 2 9348998 9351206
XR_006250779.1 True 2361 lncRNA 0.39 3 9347227 9349824

Neighbor

gene id symbol gene type direction distance location
LOC122343440 NA coding upstream 14179 9324900 ~ 9333048 (+)
LOC122343441 LOC107553872,LOC107593900 coding upstream 23605 9317580 ~ 9323622 (+)
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 305371 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 331971 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 376633 8962606 ~ 8970594 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 4761 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 194479 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 205623 9556829 ~ 9576961 (+)
bik NA coding downstream 230363 9581569 ~ 9584512 (+)
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding downstream 290042 9641248 ~ 9654380 (+)
LOC122343257 NA non-coding upstream 248249 9088755 ~ 9098978 (+)
LOC122342713 NA non-coding upstream 265361 9078018 ~ 9081866 (+)
G27352 NA non-coding upstream 271091 9068931 ~ 9076136 (+)
G27347 LOC107590965,LOC107695883 non-coding upstream 288935 9057868 ~ 9058292 (+)
G27345 NA non-coding upstream 289930 9054021 ~ 9057297 (+)
G27397 NA non-coding downstream 5160 9356366 ~ 9356870 (+)
G27404 NA non-coding downstream 134087 9485293 ~ 9485655 (+)
G27405 NA non-coding downstream 136155 9487361 ~ 9487576 (+)
G27406 NA non-coding downstream 137864 9489070 ~ 9489692 (+)
G27407 NA non-coding downstream 144228 9495434 ~ 9495653 (+)
G27360 anks1b other upstream 120015 9163147 ~ 9227212 (+)
apaf1 apaf1,LOC107744928 other upstream 126181 9038638 ~ 9221046 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 328894 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 457051 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 799225 8533816 ~ 8548002 (+)
cfap54 cfap54,LOC107695893 other downstream 30336 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 152874 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 226109 9577315 ~ 9578574 (+)
G27490 NA other downstream 236113 9587319 ~ 9590318 (+)
G27629 NA other downstream 806953 10158159 ~ 10257553 (+)

Expression


Co-expression Network