G27508 (LOC107695901,LOC107725636,LOC107553882)


Basic Information

Item Value
gene id G27508
gene name LOC107695901,LOC107725636,LOC107553882
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9577315 ~ 9578574 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40764
attttgattacaTTCATGAAACAACACATTCAACGATCAACAAAAGCCCCTAAAATGCAGCATGTATGGgctgaattattaaaaagtaaatgtttgacGACAACAAGATTTAAAACACCGTTCAGTACTGACCTTTACTATACAGTTAATAGTTTCAGACTATAAAATATCCGTTCAAATCCCTGCCAGGTTTGCATACTAAATCACTTTATTCAGCAACGACAAAAAGCACGTTATTACTGGTAATACGGTCTGTAGCGGCCCTGATCGGGGTGATGGGGCCCCGGCATCTGTCCCTGCGGAGGGGGACCCTGCATTCGAGGAGGAGGCCCCCTGGGCGCTGGCCACATTCCTGGACTCATGCCCCCGGGCTGGTTGAACGGCGGGCTGAGCGTGCTCTTGTCCTCAGGAAACTGGGGGTTGTAATGGTGGGGAGGCGGAGCACTCACAGGGGGACCTCCGTGCTGAGGGGGCGGCCCCGGAGGAGGATGGTTCATAAATGGGGGCATCTGACCGATGAGGTGTCCGGGAGGCGGGGTGATGGGAGGGGGAACGGACGACAGCGGCGGGGGGCGTGAGTGCTGCTGAGGCGGCGCCATCATGTGATGCGGATGGGTCACCACCGGCTGCCCTGGATAGTCTCCGGGGTGATGGTGAGGGGGCGGAGCGTTGCCGGGTTGGGGGAGGGGGTCGCGGGACGGCCCGGAGCTCGCCGAATCGTCCTGGATGGGAACCGTGATGAGGTTGCTGTGCTTCCGCGTGGTAACGGTCGAGATTCGGAAGGTCTCCTGAGCGAGAGAGCGGGACGGTCCCATGTCTCCCGGCGGCTGGCCTTGCGGGGGTCGAAGGTCGTCGTGGGAGGCAGAGGGAGGCTGGCTGTAGGGGTCGTGTCCCGGGTGAGCCAGAGGGGGCGGGATGAGCACATGGGGTTTGGGCAGGTGAGGTGGGGGCACACGGAAGCGGTCGGACACCTCCGAGGCGGGGGGAAGGTGGAGAGAATCAGAGCGGCTGCTGGAGCTCTTGCCGGACCGCATGTGCCGGTGGTTGATGTGAGCCTGCAGGTCTCTCTGGGACAGATAGGTGCGTTTGCAGCCCTGAACGATACTACACATGTAGAGAGAGCCGCGGTGACACTGTTCAATCCGCTGGACCGGGTCTGTACAGCTGTACATGTTCAG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Hakai-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40764 True 1178 TUCP 0.59 2 9577315 9578574

Neighbor

gene id symbol gene type direction distance location
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding upstream 354 9556829 ~ 9576961 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding upstream 22755 9545685 ~ 9554560 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding upstream 203497 9355967 ~ 9373818 (+)
LOC122343440 NA coding upstream 244267 9324900 ~ 9333048 (+)
LOC122343441 LOC107553872,LOC107593900 coding upstream 253693 9317580 ~ 9323622 (+)
bik NA coding downstream 2995 9581569 ~ 9584512 (+)
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding downstream 62674 9641248 ~ 9654380 (+)
LOC122342846 ppfia4,LOC107675841 coding downstream 137036 9715610 ~ 9722466 (+)
LOC122342860 ppfia2,LOC107694182,LOC107755902,LOC107680027,LOC107749078 coding downstream 144533 9723107 ~ 9743552 (+)
lrrc4.1 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC108432552,LOC105904105 coding downstream 505026 10083600 ~ 10088337 (+)
LOC122342620 NA non-coding upstream 20597 9554960 ~ 9556718 (+)
G27498 NA non-coding upstream 40228 9536610 ~ 9537087 (+)
G27407 NA non-coding upstream 81662 9495434 ~ 9495653 (+)
G27406 NA non-coding upstream 87623 9489070 ~ 9489692 (+)
G27405 NA non-coding upstream 89739 9487361 ~ 9487576 (+)
LOC122342587 NA non-coding downstream 81913 9660487 ~ 9673677 (+)
G27562 NA non-coding downstream 107925 9686499 ~ 9872003 (+)
G27643 NA non-coding downstream 684295 10262869 ~ 10264200 (+)
G27651 NA non-coding downstream 708904 10287478 ~ 10365571 (+)
G27731 NA non-coding downstream 1070118 10648692 ~ 10659331 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other upstream 55282 9504080 ~ 9522033 (+)
cfap54 cfap54,LOC107695893 other upstream 181558 9381542 ~ 9395757 (+)
G27360 anks1b other upstream 350103 9163147 ~ 9227212 (+)
apaf1 apaf1,LOC107744928 other upstream 356269 9038638 ~ 9221046 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 558982 9015841 ~ 9018333 (+)
G27490 NA other downstream 8745 9587319 ~ 9590318 (+)
G27629 NA other downstream 579585 10158159 ~ 10257553 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other downstream 787138 10365712 ~ 10367925 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other downstream 900867 10479441 ~ 10507554 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other downstream 1083657 10662231 ~ 10675110 (+)

Expression


Co-expression Network