G27562


Basic Information

Item Value
gene id G27562
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9686499 ~ 9872003 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40854
atttttttgatgtcctattttaacatttaagatCGATTTGCTTCTCGTTTGAAGTATTTTGTGCCTAAATGTACAAACCCCTCTCCCCACACTCCATGCAGACCTGAAAAGATGcacaattattttagaaaatgctAAAAAGTTTCCGTGCCTACAAAGTCGAGCATTTTTGTACGACTCTTAAATAAAGAGTCACTTGCCATCAATTTGcattcacacatttatttcatcccaaaatatttaccaaaaaagaaaaaaaaacgtaatgacAGTTTGATATTCATTCGGCCAGATATAAGAACACATATTAATAGTGATTCATTTCTATAAAGAGCTAGAAGTACAATAACAGAACATCtcttgtgtacattttttaagtttaatatcagaatttctcttttaaatgtaGGACTCCATGCAGCTAGCGAGAGACACAGACGCAGACATTATAAGTACACCAAACATCAGTGTTTTAATTACAGAGCTCTTTGCACCGTATCTAACAAAATGTTGCTAACAGGAGATAATCAAATGACAATTAATCTTAATTGAAAcctttatttgcaaaataagAACCGACGTCTACAGTAGTGACTTCATTAACAACACGGAGAACCCAAAAAGTGGTTCCACAACAGTACGTCCTGTGCTGATGACATCGGCGGAGCACTGCTCCATTTCCCAGGGCTAAACGCTGACACAAATTGCGCGCCATGCTTTTGGATCATAATTCAAAGGGACTAACCCTGTCTCCAATATGAGGGTCACATTGTCATCAGTACGGGAtggtttatatgcattttttaaaaaagtgagcAAATACTTTGAACAATCATGTTACTTTATAAACGTTATCCTTTACCGCTACCGATAAACACCTGATACGtcgatatttattaaatattaatttgggTGAACTTTATTTGTGCTTAATACCTTAGTTATATTTATCTATGAAGCATatggtctcttttttttccgtAAAGTGCATGAGAGGAGCGGAGACAACGGGAAGGCCTGGGGACAGCGGAGTCACATGACCAAAGCACTCAGCTGGTGTCCTGGTGAACGGGCAGGAAGTTATGGGGATAAATGCTTTGGGGCGTGAAAGCATAATACCAAGATGCCCATGGACCTGGCTGAATACCCAACTCTCATATCTTAAGGCTGTCGCAGGCACCAGAAGGGAGAACGGGTGCCATTCATATACAGCCTTTATGACCCACTTAAGCTTCTCCTGTGTTTCTTTTCCGTACTTTTCTGTGTTGCattacataatgcattaaaagtatGACAGTCTGTCAGGTTCACTGAAAtactttagtttaatttaatagaataaaaagtTTAGCGGGAAGACGAAAGATAACGGACCATGTGATCAGTTCTACCTCTATATTTCTTTATCTTGAGAGCAGCGAAATGAATTTAAAAGCACTAATCACGTACTAATCTTCTCAAAGGTTTTATAGgctaataaaatactttatttatttatttattttttttcgcaAAGACCaacaaacatataaatgcagctattgcaatattacaatataaattatgGAACGTTCCATTAGTTACCCCcgtcctttatttatttattttacccttCATTTTCCACGGTATGAATTTCAAAATGGGTATTTTATTcaatctgcatttttttgatgtttgatgCTATTGTCACCACTGGTAAATATgagacaaaaaattaaaattaaataccgTGAAGTTATGTAGAGAATTAAAACTGGGAacgctttttttaaaaggtgtACGTTACATGTCCTtcctattataataacaataaatgaaatttacCCCAAGCCAAACCCTAATGCTCCTAACCCTAATCATACAGTAAGAACGCGTAGTTACttaatacttaaatgtgtaattacactgCAATAAagacaccataaaataaagcataaccTAAAAACTTTATCAGTTGGCATCCATGTGATTCCTTAATGAAGGGTCTCTCCACATGCTACAgacttaaaatgattttatattaaaatatagtgaTAGAAGGCCACCAAGCACATGTGGCGAGGGCCGTGCCTTAATTTCTGCACTGATGTAAATGCAGGTTTTGTTTCTGTCATCCTTCACCTACTGCGTGTTTAGTCAATTTGAGACAGGATTTTAGGTCCTTTGTGGACGCATGAAATCAAATtctattcaaatgcaaaaagttTGCACATTCCCCACACAATGTGTGCTGCTGGATCTACGCAAAACGCCGTATTTTGCATTTATGACTGTTTTAGGAACCCTTGGGGTTAATCTGCTAATAGATATAAATACTTATATCATCACACTGTTCGTTTATCGCAAACAGAAAGCATAACATTTTTGGAGTGTGCTCTGCAAGTGAATGCTTTTTCTATTTGTCAGTGGGTTTTGAGGGCTTGATATGTCTGTTGGGATGTTTTGGTCCCCTGCAGATACTTTTTGGGGTAAGGGCTTCCTGGCTACTGGTTCAAGGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40854 True 2500 lncRNA 0.36 2 9686499 9872003

Neighbor

gene id symbol gene type direction distance location
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding upstream 32119 9641248 ~ 9654380 (+)
bik NA coding upstream 101987 9581569 ~ 9584512 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding upstream 109538 9556829 ~ 9576961 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding upstream 131939 9545685 ~ 9554560 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding upstream 312681 9355967 ~ 9373818 (+)
lrrc4.1 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC108432552,LOC105904105 coding downstream 211597 10083600 ~ 10088337 (+)
pax4 LOC107695909,LOC107576795 coding downstream 289144 10161147 ~ 10164486 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding downstream 497336 10369339 ~ 10374317 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding downstream 510616 10382619 ~ 10397829 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding downstream 576276 10448279 ~ 10463617 (+)
LOC122342587 NA non-coding upstream 12822 9660487 ~ 9673677 (+)
LOC122342620 NA non-coding upstream 129781 9554960 ~ 9556718 (+)
G27498 NA non-coding upstream 149412 9536610 ~ 9537087 (+)
G27407 NA non-coding upstream 190846 9495434 ~ 9495653 (+)
G27406 NA non-coding upstream 196807 9489070 ~ 9489692 (+)
G27643 NA non-coding downstream 390866 10262869 ~ 10264200 (+)
G27651 NA non-coding downstream 415475 10287478 ~ 10365571 (+)
G27731 NA non-coding downstream 776689 10648692 ~ 10659331 (+)
G27729 NA non-coding downstream 781701 10653704 ~ 10658141 (+)
G27754 NA non-coding downstream 1304421 11176424 ~ 11178043 (+)
G27490 NA other upstream 96181 9587319 ~ 9590318 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other upstream 107925 9577315 ~ 9578574 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other upstream 164466 9504080 ~ 9522033 (+)
cfap54 cfap54,LOC107695893 other upstream 290742 9381542 ~ 9395757 (+)
G27360 anks1b other upstream 459287 9163147 ~ 9227212 (+)
G27629 NA other downstream 286156 10158159 ~ 10257553 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other downstream 493709 10365712 ~ 10367925 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other downstream 607438 10479441 ~ 10507554 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other downstream 790228 10662231 ~ 10675110 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other downstream 814094 10686097 ~ 10702203 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028730 dre-mir-129-1 non-coding NC_007115.7 CM002888.2 19047466 ~ 19047555 (-)
grasscarp (Ctenopharyngodon idella) CI01000020_00466505_00489442 NA coding CI01000020 null 466276 ~ 489664 (+)
rainbow trout (Oncorhynchus mykiss) G1713044 NA non-coding NC_048585.1 CM023239.2 18080075 ~ 18083417 (+)
eurasian perch (Perca fluviatilis) G157330 NA non-coding NC_053126.1 CM020923.1 22377944 ~ 22381452 (-)
mexican tetra (Astyanax mexicanus) G157246 NA non-coding NC_035914.1 CM008317.1 8947884 ~ 8948321 (-)