lamtor4 (si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063)


Basic Information

Item Value
gene id lamtor4
gene name si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10365712 ~ 10367925 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40966
TTGAAAGGAACGGTCGGCTACCTTGTGACGTTATAAACACGCGACGCTTGTTCGTCAGTCACGTGAGGCAGGGCGTGAAGAAAGACAACAGTGTAAATTCAACTGCACTGCCCGAAAATGACCACCGCTCTGACCCAGGGTTTGGAGAGAATACCCGATCAGGTTGGGTATTTGGTTATTAGTGAGGAAGGCGTGCTTGCGTCTGCAGGAGAGCTGGAAAATGACGAGCACGCAGCAGGAGTGATCATGCAGATGGTCAGAACAGCTTGTCGTTTCAGATTGCATGGGACAGCCGAGCCCCCTTTTAAACGCATGTCAGtgatGTTTGAAGACTACGTTTATGCCGTGACCATATCTGGACAGAAAGTTTTTGTAGTCAAACGGCAGAACAACCAGCGGGAACCTGTTATTGTGTAAAGACCGTAATATGGACTGATCCTACCCATTATTACAAGCTCAAAATGGTGCCCTCACGTTGAAATTACCCCGCCATTACAACTATCTGATGTTTAGCACAATCACAGttgatttcttttgtaaaagaCTTGATTACAACGATTTGGTGGTGGTGTCAGGTGTGTTTGACCTGACCCCAAGTAAATtaatgtggggtttttttgtttttttttgtatgattacAACGTTACAGACTGGTTAAAGGATTCATCTTCTGTCTTTTAATGCAGGAGTAAATGCTATCAATGTTTTAGACCCCATTTATGCTTGAGTGGTCACATTTAAGGTATTACTGGAGTTCattatatgtgtgcatttaaatttaactCATACAACCCATTAACCTACGGTTTCCTTATAATAAATACCTGCTTATAGCATCCTGTTTTTATGCAGGAATCATAATAGACTCGATTAtgtatacaaacacatgcattagCCACGGTTTTTCTTCGACAATGTTACACTGGGTgttataattttgttaaatttcaTATTCCACTTTTAACGTAAAGTGAGAAACCTTGGAGTAAGGTGTTAAGTTATTTTCCGTGGGGTCTGTGAAAGCAGAAATTGAAGTGCACTGAACGAATCTTGCAGTCTATTTCTAAATGTGTTCAATTAACAGGCTTGAAATCTTATCTTTGAATAACTgcattaacaataatatattaaataaaggaCTATGC
>XM_043238035.1
CATTTTGCGGgttgtataaaaaaacacaagcgaTGTAAAATTGAAAGGAACGGTCGGCTACCTTGTGACGTTATAAACACGCGACGCTTGTTCGTCAGTCACGTGAGGCAGGGCGTGAAGAAAGACAACAGTGTAAATTCAACTGCACTGCCCGAAAATGACCACCGCTCTGACCCAGGGTTTGGAGAGAATACCCGATCAGGTTGGGTATTTGGTTATTAGTGAGGAAGGCGTGCTTGCGTCTGCAGGAGAGCTGGAAAATGACGAGCACGCAGCAGGAGTGATCATGCAGATGGTCAGAACAGCTTGTCGTTTCAGATTGCATGGGACAGCCGAGCCCCCTTTTAAACGCATGTCAGtgatGTTTGAAGACTACGTTTATGCCGTGACCATATCTGGACAGAAAGTTTTTGTAGTCAAACGGCAGAACAACCAGCGGGAACCTGTTATTGTGTAAAGACCGTAATATGGACTGATCCTACCCATTATTACAAGCTCAAAATGGTGCCCTCACGTTGAAATTACCCCGCCATTACAACTATCTGATGTTTAGCACAATCACAGttgatttcttttgtaaaagaCTTGATTACAACGATTTGGTGGTGGTGTCAGGTGTGTTTGACCTGACCCCAAGTAAATtaatgtggggtttttttgtttttttttgtatgattacAACGTTACAGACTGGTTAAAGGATTCATCTTCTGTCTTTTAATGCAGGAGTAAATGCTATCAATGTTTTAGACCCCATTTATGCTTGAGTGGTCACATTTAAGGTATTACTGGAGTTCattatatgtgtgcatttaaatttaactCATACAACCCATTAACCTACGGTTTCCTTATAATAAATACCTGCTTATAGCATCCTGTTTTTATGCAGGAATCATAATAGACTCGATTAtgtatacaaacacatgcattagCCACGGTTTTTCTTCGACAATGTTACACTGGGTgttataattttgttaaatttcaTATTCCACTTTTAACGTAAAGTGAGAAACCTTGGAGTAAGGTGTTAAGTTATTTTCCGTGGGGTCTGTGAAAGCAGAAATTGAAGTGCACTGAACGAATCTTGCAGTCTATTTCTAAATGTGTTCAATTAACAGGCTTGAAATCTTATCTTTGAATAACTgcattaacaataatatattaaataaaggaCTATGCATATTTTACTTTC

Function

symbol description
lamtor4 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; positive regulation of TOR signaling; and protein localization to lysosome. Predicted to be part of Ragulator complex. Predicted to be active in lysosome. Orthologous to human LAMTOR4 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0061462 protein localization to lysosome biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0008361 regulation of cell size biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0005764 lysosome cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K20399 LAMTOR4; ragulator complex protein LAMTOR4

RNA

RNA id representative length rna type GC content exon number start site end site
TU40966 False 1145 TUCP 0.40 4 10365752 10367912
XM_043238035.1 True 1198 mRNA 0.39 4 10365712 10367925

Neighbor

gene id symbol gene type direction distance location
pax4 LOC107695909,LOC107576795 coding upstream 201226 10161147 ~ 10164486 (+)
lrrc4.1 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC108432552,LOC105904105 coding upstream 277375 10083600 ~ 10088337 (+)
LOC122342860 ppfia2,LOC107694182,LOC107755902,LOC107680027,LOC107749078 coding upstream 622160 9723107 ~ 9743552 (+)
LOC122342846 ppfia4,LOC107675841 coding upstream 643246 9715610 ~ 9722466 (+)
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding upstream 711332 9641248 ~ 9654380 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding downstream 1414 10369339 ~ 10374317 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding downstream 14694 10382619 ~ 10397829 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding downstream 80354 10448279 ~ 10463617 (+)
cacna1c cacna1c,LOC107590584,LOC107732972 coding downstream 160120 10528045 ~ 10642451 (+)
LOC122342684 NA coding downstream 346835 10714760 ~ 10716607 (+)
G27651 NA non-coding upstream 141 10287478 ~ 10365571 (+)
G27643 NA non-coding upstream 101512 10262869 ~ 10264200 (+)
G27562 NA non-coding upstream 493709 9686499 ~ 9872003 (+)
LOC122342587 NA non-coding upstream 692035 9660487 ~ 9673677 (+)
LOC122342620 NA non-coding upstream 808994 9554960 ~ 9556718 (+)
G27731 NA non-coding downstream 280767 10648692 ~ 10659331 (+)
G27729 NA non-coding downstream 285779 10653704 ~ 10658141 (+)
G27754 NA non-coding downstream 808499 11176424 ~ 11178043 (+)
G27760 NA non-coding downstream 810597 11178522 ~ 11179311 (+)
G27777 NA non-coding downstream 908504 11276429 ~ 11296804 (+)
G27629 NA other upstream 108159 10158159 ~ 10257553 (+)
G27490 NA other upstream 775394 9587319 ~ 9590318 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other upstream 787138 9577315 ~ 9578574 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other upstream 843679 9504080 ~ 9522033 (+)
cfap54 cfap54,LOC107695893 other upstream 969955 9381542 ~ 9395757 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other downstream 111516 10479441 ~ 10507554 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other downstream 294306 10662231 ~ 10675110 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other downstream 318172 10686097 ~ 10702203 (+)
LOC122342850 LOC107740709 other downstream 339207 10707132 ~ 10708947 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other downstream 963620 11331545 ~ 11334456 (+)

Expression


Co-expression Network