G27731


Basic Information

Item Value
gene id G27731
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10648692 ~ 10659331 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41078
TGGAGGCCAAAATGATCAGAACAACAATATTTTCACCAGCTTACTCggttatttctatatttctatgtATGTGTCAGGAGGAATTatcactttacatttacaaacatttatttagtccAAACACGTCCCTGTCTCtgtaaagacataaataaacactCTGTCCTTTTATATCTaacaatagtaaaataaaactaatagaTAACATGGAATCggttaaatgtttgtttttaaagcccataaaaataaatgatgacaaccTACACATTCAGCACCAAACAACACTCATGATCAAACACACTCACCTGTCCACGAGCAGATGTCCATCTTCACAGTCAATGTCCACATGTCCTTCAACTCTGTACAGTCCAGACACGTGAGAAAACACCTCTCTATGAAGAAAGACTGCTGGTACACTGACTGACTCTTTAACAAACACGAGTCACACTTTACAACACCACCAGATAAACAACAGCTTTTCTCACGATTATACTTTCTAAGCTTGATCCCTGCTCATAGCTGTCTCTACTTCAGCTTCATGTTATCAACGCAACAACTATCCGTGTGTTTATTGTCCTGAAAGTCTGACAGCGGGCTGGATTTCAGCAAAACAGTCAGCAGATAAACAAGATCTGTGTCAAATCAGCAGTGAGGCAGTCGGAGACTTTTACACATTAAAGACCTGCTTTCAGGAAACACATTAAAGACCTGCTTTCACGTGTCAGAAGGGAGATACTTAAAGACAAAGAGCTAAACGAGTACAAGTGACTTTACAGGAGAAGTTACTTACAGGCGAGTCTCGTGAAATCCTCTCTTCACGCTCTTTATCGCAGTAAACGATGGTTTGTTTCAGTCTGGCCCGAAATATGTGCCGTTTAGTCAAACGTCTGAGCTGTCAGGTGCATAACCTTTACTTTTAACGCATTAAAACAGTGTTAAAACAGTCTAAAAACGGTCTCAAGTGTTTGTTGACGCTGCTGTCAGGTGTCACGCTGACAATGATGCGCAGAGCCCGCGGGCGCCCCCTAGCGGTCCGGACGATAAAACACGATTTATTCCCGGCAGACGAGTCGTGTTATGATCACAAATACTCCAGGCTGTTCCCTAAACGATCGCTGAAACGTCTAGTTTACGTTAACGTTGACACACTCAAGCGAAATGGCCATTTATCACGCTGAACGCCAGACAGGTGAAAGCAGGTGATCGGCGGCTCCCTCTTGTGGCCAGAAAGTGAAGCAGATTCATTAAACGACGCTAGATTGAAGAGGACAGTCGAGGCGAGAGGACGTCCGTGTGGGGCTTTATACGCGTTAAAATAAAGGTATAATGTTGTCAGCAGGTAAACTCGGACGCTGGCAGTTAACTGACTCGGATCGGCTCTCAAATGAGGAGAAAAGTGTCCGATGTTTTGAACTGGAAGCCACGTGGCCGAAATACAAACACAGATACAATGCGGGACAGAGTGTCTTCCGACGATGTTTTGACTGATTTATCTGCTGGTTAAGTAGatgcttttttaaatctaaagtgGTGTTTTCGTCTCATGTTCtcaattatgtaataatatcgTATGTTTATTTGCGGATTCAATCAGCGTTCATAGCAGTGCGCCCCCATGTGGACACGAAGAGCATCTGCAGGACAAACTCTTTCTCTTAGTGTTTACAAAAACTATTGTGAGACAATGATTTGATTCACTGTGTGCTGCTGAACAAGAAAAACCTCTCATTCTTGAACCTCAGTACTGGTTAAAatcctgcattttttttatattttatagtaatatataaaaaaccaaAAGGGAATAAAGAGCAACTTTGCCATGTCCAGCTTAATTGTGCAACATATTAACTGAATACAAGCTGTTTTGCATGAGGTGTCCTGTGTTCAAACACATGAtcactttaacatttaatttacagcAAAACACCTGAAAACAATATAAGCTAATTActcttcaaaaagaaaacaaaaggtcTTTGGTTCAGATGAAAGCTgtctttcatacattttttcatttcattacctCGTATATCTAAAATAGTATGCGCACTACTAAATCTCAGTGGTTCAATAGATAAAGTGTTGTGTTTCGATGCTGGAGTCCTGAGTTCAAATCCCATTAGTGCTTTGTTAAAAACCTGACGTATTTCATCCTATCCCACAAAGTGTCTGAAACAGCAGCAGACACCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41078 True 2191 lncRNA 0.40 2 10648692 10659331

Neighbor

gene id symbol gene type direction distance location
cacna1c cacna1c,LOC107590584,LOC107732972 coding upstream 6241 10528045 ~ 10642451 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding upstream 185075 10448279 ~ 10463617 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding upstream 250863 10382619 ~ 10397829 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding upstream 274375 10369339 ~ 10374317 (+)
pax4 LOC107695909,LOC107576795 coding upstream 484206 10161147 ~ 10164486 (+)
LOC122342684 NA coding downstream 55429 10714760 ~ 10716607 (+)
LOC122342683 NA coding downstream 58422 10717753 ~ 10720201 (+)
LOC122342682 NA coding downstream 62994 10722325 ~ 10726265 (+)
nav3 nav3,LOC107755908,LOC107680031 coding downstream 197754 10857085 ~ 10982814 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding downstream 339598 10998929 ~ 11156744 (+)
G27651 NA non-coding upstream 283121 10287478 ~ 10365571 (+)
G27643 NA non-coding upstream 384492 10262869 ~ 10264200 (+)
G27562 NA non-coding upstream 776689 9686499 ~ 9872003 (+)
LOC122342587 NA non-coding upstream 975015 9660487 ~ 9673677 (+)
LOC122342620 NA non-coding upstream 1091974 9554960 ~ 9556718 (+)
G27754 NA non-coding downstream 517093 11176424 ~ 11178043 (+)
G27760 NA non-coding downstream 519191 11178522 ~ 11179311 (+)
G27777 NA non-coding downstream 617098 11276429 ~ 11296804 (+)
G27778 NA non-coding downstream 637916 11297247 ~ 11300131 (+)
G27789 NA non-coding downstream 679010 11338341 ~ 11367704 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other upstream 141138 10479441 ~ 10507554 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other upstream 280767 10365712 ~ 10367925 (+)
G27629 NA other upstream 391139 10158159 ~ 10257553 (+)
G27490 NA other upstream 1058374 9587319 ~ 9590318 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other upstream 1070118 9577315 ~ 9578574 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other downstream 2900 10662231 ~ 10675110 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other downstream 26766 10686097 ~ 10702203 (+)
LOC122342850 LOC107740709 other downstream 47801 10707132 ~ 10708947 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other downstream 672214 11331545 ~ 11334456 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other downstream 726799 11386130 ~ 11416227 (+)

Expression


Co-expression Network