LOC122342850 (LOC107740709)


Basic Information

Item Value
gene id LOC122342850
gene name LOC107740709
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10707132 ~ 10708947 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41106
TTTCAGCATCAGTCTGTCAGAGAAGATTGAAGCTCTCAGTGGATCCTGTGTGATCATAAAATGCTCTTTTGAGATTAGAGACGATTATGATAAATTCCTCACTGAGAAAGCTGCTACAGGAGTTTGGCTCAAAGATGGGACACATGCAGATATCAATCAAGTGTTTAACTCCAGAAATCCCAAACCTGGTCCCTTGAGTGGAAAAATAACTGGAAATCTACACGAAAAGAACTGCACAACTATCTTTTATAATGTTAGTTCAAGAGACAGTGGAAGTTATTACTTCAGGATTATGAGTGGTGAAGGTCTGAAATACAACTATATACATCACTTCTCCACTATAAATGTAACTGAGTCTCCTCCTAAACCCAGAGTGCAGCTGTATGTGGATGAGGAGAAGAGGCAGGATCAGGAGGAGGTGTTGGAGGGGAGCTCTGTGAGTCTGCGCTGCTCTGCTGAGACTCTCTGCTCCTCTTCTCCAGCGACTCTCACATGGAGCTCCACTCCCAGAATCCCCCTCAATGACAGCAGCAGACTACAGGAGCTCATCTCTGATCTCAAGTTCACTGCTACTCACCGAGAGCACAGAGTCACTTTCACCTGCACTATAACCTACCAGATACAGGACCAGAACAAAACAGCTCAGGACAGCATCACGCTACTCGTTCAGTatgCTCCTCAGATCTCCACTTCCTCCAGCTGTATTAGTGGAGATGTAacggtgtgtttgtgtgaggcTGATGGGAATCCCTCTCCTGAACTGGAGTGGCATCTGTCTGGACGTCCTGTCACTAACTCTTCAAACAGAAACACTCGAGGATCTGATAAACAACTGTTTCATTTGCTTCAGAAGTCAGctcCATGGGTGGTGTTC
>XM_043236986.1
ATGGAAACTGTGGAGAagatctttttttactttttgctttttcaaggtgTTTGTTGTAAAGATTTCAGCATCAGTCTGTCAGAGAAGATTGAAGCTCTCAGTGGATCCTGTGTGATCATAAAATGCTCTTTTGAGATTAGAGACGATTATGATAAATTCCTCACTGAGAAAGCTGCTACAGGAGTTTGGCTCAAAGATGGGACACATGCAGATATCAATCAAGTGTTTAACTCCAGAAATCCCAAACCTGGTCCCTTGAGTGGAAAAATAACTGGAAATCTACACGAAAAGAACTGCACAACTATCTTTTATAATGTTAGTTCAAGAGACAGTGGAAGTTATTACTTCAGGATTATGAGTGGTGAAGGTCTGAAATACAACTATATACATCACTTCTCCACTATAAATGTAACTGAGTCTCCTCCTAAACCCAGAGTGCAGCTGTATGTGGATGAGGAGAAGAGGCAGGATCAGGAGGAGGTGTTGGAGGGGAGCTCTGTGAGTCTGCGCTGCTCTGCTGAGACTCTCTGCTCCTCTTCTCCAGCGACTCTCACATGGAGCTCCACTCCCAGAATCCCCCTCAATGACAGCAGCAGACTACAGGAGCTCATCTCTGATCTCAAGTTCACTGCTACTCACCGAGAGCACAGAGTCACTTTCACCTGCACTATAACCTACCAGATACAGGACCAGAACAAAACAGCTCAGGACAGCATCACGCTACTCGTTCAGTatgCTCCTCAGATCTCCACTTCCTCCAGCTGTATTAGTGGAGATGTAacggtgtgtttgtgtgaggcTGATGGGAATCCCTCTCCTGAACTGGAGTGGCATCTGTCTGGACGTCCTGTCACTAACTCTTCAAACAGGTTCATCAGTGAAGAGCGATTGAGCAGCACAGGCTTGAGGAGCTCCATCACTCTCCATCAgtctctcacaaacacatccaCTCTGCTGTGTGTCAGCAGAAACACTCGAGGATCTGATAAACAACTGTTTCATTTGCTTCAGAAGTCAGctcCATGGGTGGTGTTCATATCTGGTTTTGGAGTTGGTTTCGTGGCTCTGGCGGTCATTGTGTTGTTGTGCGCCATTACATGTATACGGTAG

Function

NR:

description
PREDICTED: sialic acid-binding Ig-like lectin 10, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41106 False 874 TUCP 0.46 5 10707639 10708872
XM_043236986.1 True 1110 mRNA 0.45 5 10707132 10708947

Neighbor

gene id symbol gene type direction distance location
cacna1c cacna1c,LOC107590584,LOC107732972 coding upstream 64681 10528045 ~ 10642451 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding upstream 243515 10448279 ~ 10463617 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding upstream 309303 10382619 ~ 10397829 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding upstream 332815 10369339 ~ 10374317 (+)
pax4 LOC107695909,LOC107576795 coding upstream 542646 10161147 ~ 10164486 (+)
LOC122342684 NA coding downstream 5813 10714760 ~ 10716607 (+)
LOC122342683 NA coding downstream 8806 10717753 ~ 10720201 (+)
LOC122342682 NA coding downstream 13378 10722325 ~ 10726265 (+)
nav3 nav3,LOC107755908,LOC107680031 coding downstream 148138 10857085 ~ 10982814 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding downstream 289982 10998929 ~ 11156744 (+)
G27731 NA non-coding upstream 47801 10648692 ~ 10659331 (+)
G27729 NA non-coding upstream 48991 10653704 ~ 10658141 (+)
G27651 NA non-coding upstream 341561 10287478 ~ 10365571 (+)
G27643 NA non-coding upstream 442932 10262869 ~ 10264200 (+)
G27562 NA non-coding upstream 835129 9686499 ~ 9872003 (+)
G27754 NA non-coding downstream 467477 11176424 ~ 11178043 (+)
G27760 NA non-coding downstream 469575 11178522 ~ 11179311 (+)
G27777 NA non-coding downstream 567482 11276429 ~ 11296804 (+)
G27778 NA non-coding downstream 588300 11297247 ~ 11300131 (+)
G27789 NA non-coding downstream 629394 11338341 ~ 11367704 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 4929 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 32022 10662231 ~ 10675110 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other upstream 199578 10479441 ~ 10507554 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other upstream 339207 10365712 ~ 10367925 (+)
G27629 NA other upstream 449579 10158159 ~ 10257553 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other downstream 622598 11331545 ~ 11334456 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other downstream 677183 11386130 ~ 11416227 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 980367 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 1088035 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 2441789 13150736 ~ 13154358 (+)

Expression


Co-expression Network