G27760


Basic Information

Item Value
gene id G27760
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11178522 ~ 11179311 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41154
gagagagagagagagagagagacagagagaggtatagaaagagaggagagggagaggtgtagagagagagagaggaaggaaatGGAGAAAGCAAATATATTCATTGTATTCAGCTAAGTTCTCTTCTGATAAATTGCACATTGCTTGAAAAGGAATTCATATCTGTTTGTGATGACAGGCTTTGTGATTTTGACAGCCAATTTAAAAAGGTAAGATCTCAGGATCTCAGAAAGCCAGTCTAATAAAGTCCGGCCCTGGCCCAGGCCTGCTCTGGCATTCTGAAGCTGTGCTCACGTGCCCTAAATCTTTCCTGCTTTATGCGATAAACATTCAAATCCTTCCAGAGACAAGCGGCCCAGCCTGTCGCCCGTACACAATTCTCATTTAACCACATAGGCCTCGTAAGATTAAATATGAACGCTGAAATCCTCGAGCTTACCAGCATTTGAGAATTCC
>TU41155
gagagagacagagagagagagagagagagagagagagagagagacagagagaggtatagaaagagaggagagggagaggtgtagagagagagagaggaaggaaatGGAGAAAGCAAATATATTCATTGTATTCAGCTAAGTTCTCTTCTGATAAATTGCACATTGCTTGAAAAGGAATTCATATCTGTTTGTGATGACAGGCTTTGTGATTTTGACAGCCAATTTAAAAAGGTAAGATCTCAGGATCTCAGAAAGCCAGTCTAATAAAGTCCGGCCCTGGCCCAGGCCTGCTCTGGCATTCTGAAGCTGTGCTCACGTGCCCTAAATCTTTCCTGCTTTATGCGATAAACATTCAAATCCTTCCAGAGACAAGCGGCCCAGCCTGTCGCCCGTACACAATTCTCATTTAACCACATAGGCCTCGTAAGATTAAATATGAACGCTGAAATCCTCGAGCTTACCAGCATTTGAGAATTCC

Function

NR:

description
PREDICTED: copine-3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41154 False 456 lncRNA 0.44 2 11178767 11179311
TU41155 True 478 lncRNA 0.44 4 11178522 11179311

Neighbor

gene id symbol gene type direction distance location
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding upstream 21778 10998929 ~ 11156744 (+)
nav3 nav3,LOC107755908,LOC107680031 coding upstream 195708 10857085 ~ 10982814 (+)
LOC122342682 NA coding upstream 452257 10722325 ~ 10726265 (+)
LOC122342683 NA coding upstream 458321 10717753 ~ 10720201 (+)
LOC122342684 NA coding upstream 461915 10714760 ~ 10716607 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding downstream 145322 11324633 ~ 11326693 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding downstream 394436 11573747 ~ 11575237 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding downstream 422890 11602201 ~ 11606571 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding downstream 438750 11618061 ~ 11652758 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding downstream 561421 11740732 ~ 11783807 (+)
G27754 NA non-coding upstream 479 11176424 ~ 11178043 (+)
G27731 NA non-coding upstream 519191 10648692 ~ 10659331 (+)
G27729 NA non-coding upstream 520381 10653704 ~ 10658141 (+)
G27651 NA non-coding upstream 812951 10287478 ~ 10365571 (+)
G27643 NA non-coding upstream 914322 10262869 ~ 10264200 (+)
G27777 NA non-coding downstream 97118 11276429 ~ 11296804 (+)
G27778 NA non-coding downstream 117936 11297247 ~ 11300131 (+)
G27789 NA non-coding downstream 159030 11338341 ~ 11367704 (+)
G27801 NA non-coding downstream 250651 11429962 ~ 11434331 (+)
G27805 LOC107590700,LOC107590977,LOC107694182,LOC107755902 non-coding downstream 263913 11443224 ~ 11444716 (+)
LOC122342850 LOC107740709 other upstream 469575 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 476319 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 503412 10662231 ~ 10675110 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other upstream 670968 10479441 ~ 10507554 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other upstream 810597 10365712 ~ 10367925 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other downstream 152234 11331545 ~ 11334456 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other downstream 206819 11386130 ~ 11416227 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 510003 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 617671 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 1971425 13150736 ~ 13154358 (+)

Expression


Co-expression Network