G27778


Basic Information

Item Value
gene id G27778
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11297247 ~ 11300131 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41174
CTTGTACTGCAGAGTGGCAGGCTCGATCATCTCAAGAGGTCTTCCGTTGACTTTGATGAGTCCATTTCCCCTCTTGCAGTGGGCAACAGCAGTGGCTGTTTTCTGTTGACAGTgaacagaaaaaacacagatCAGCCAACACATCTCCATAAATCAGAAACAATATAAACTAATGGCACGTGTTAATCTACGTGACAAAGTTGTTTCTTCTACAAGACACCGCCAAAACGAACGTGCTCATAACTACATAAAAAGATATGAAAGCTgttatatgtctgtgtgtgtgtgcactcgAGCGTGCACTGCTGCCTTGACAGACGAAAGCAAAGTGGATCTAACTAACAGTCAGGGAGAACAGGAAGGCCCAGGAGCACAGCAAGACAAGGAGACAGTCTTCAGACTGAGAAAGTGATGTCTGGCAGCTTCTTTGATCAGTACACACCAAAAACAGCAGTTTCATCTGTAACATTTGCAGTGAACTGACTCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41174 True 490 lncRNA 0.44 2 11297247 11300131

Neighbor

gene id symbol gene type direction distance location
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding upstream 140503 10998929 ~ 11156744 (+)
nav3 nav3,LOC107755908,LOC107680031 coding upstream 314433 10857085 ~ 10982814 (+)
LOC122342682 NA coding upstream 570982 10722325 ~ 10726265 (+)
LOC122342683 NA coding upstream 577046 10717753 ~ 10720201 (+)
LOC122342684 NA coding upstream 580640 10714760 ~ 10716607 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding downstream 24502 11324633 ~ 11326693 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding downstream 273616 11573747 ~ 11575237 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding downstream 302070 11602201 ~ 11606571 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding downstream 317930 11618061 ~ 11652758 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding downstream 440601 11740732 ~ 11783807 (+)
G27777 NA non-coding upstream 443 11276429 ~ 11296804 (+)
G27760 NA non-coding upstream 117936 11178522 ~ 11179311 (+)
G27754 NA non-coding upstream 119204 11176424 ~ 11178043 (+)
G27731 NA non-coding upstream 637916 10648692 ~ 10659331 (+)
G27729 NA non-coding upstream 639106 10653704 ~ 10658141 (+)
G27789 NA non-coding downstream 38210 11338341 ~ 11367704 (+)
G27801 NA non-coding downstream 129831 11429962 ~ 11434331 (+)
G27805 LOC107590700,LOC107590977,LOC107694182,LOC107755902 non-coding downstream 143093 11443224 ~ 11444716 (+)
G27825 NA non-coding downstream 297164 11597295 ~ 11597703 (+)
G27826 NA non-coding downstream 297741 11597872 ~ 11598315 (+)
LOC122342850 LOC107740709 other upstream 588300 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 595044 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 622137 10662231 ~ 10675110 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other upstream 789693 10479441 ~ 10507554 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other upstream 929322 10365712 ~ 10367925 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other downstream 31414 11331545 ~ 11334456 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other downstream 85999 11386130 ~ 11416227 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 389183 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 496851 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 1850605 13150736 ~ 13154358 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G110249 NA non-coding CI01000019 null 4220591 ~ 4221782 (-)
tiger barb (Puntius tetrazona) G84547 NA non-coding NC_056710.1 CM032079.1 478023 ~ 478431 (-)