myf5 (LOC107560306,LOC107680018,LOC107749081)


Basic Information

Item Value
gene id myf5
gene name LOC107560306,LOC107680018,LOC107749081
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11331545 ~ 11334456 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41185
GTGAAGCGCTCGGACCCTGCAGTCGTAGAGGAAGCGATCGatgcatgtatatgtaataaGACGTGCAAtgctttatatttatgtttgctGATGGAACTGTGTTTTTCACTTTAGGTTGACTGCAACAGTCCTGTATGGCCTCAGATGAATCCAAACTTTGGGAACAACTACAACTTCGAAGCACAAAATGCTAGCGCAATGGACAGAGCTCCCGGAGCGTCCAGTTTGCAGTGTTTGTCCAGCATCGTGGACAGGCTGTCCTCTGTAGATACAGGAGTTGCAATGGGAATGAGGAACATGGTTGCTCTCTCTCCAACTGGAAGTGATTCCCAGTGCAGTTCTCCAGAAAGTCCCAGCAACAGACCGGTCTACCACGTCCTGTGAGAGGGAGCGAGACGCTCTGCGGCACCCGTTCACGTTGCATGTTCATTTATGAAGTCTTTCGGATCGTTTGATAATGCTTTCAGATACCAATAAGAATGTAGTCATTGCAAACCTCCATGCATCACAGTGACAACGATTTGCCTTCAAAATCACGGCTGAAATGCGAAACAAAGGCTTGGTTATAATATGTGACCATGCTTTAAAAAAGCCGTactatgcataaaaaatatgtcaCACAGTGGATGTTTTTTACCATGTTGACTGGCTGTACAGCTGTACTGCATCGAAActggttttatttaatcattgaGGTACTGTATTGTAATATTAGCCAACTTAATGTTATCCACGACCTACCATCATTTGTGTTGTAAATAAGATtgtacataatttaaataactgttattGTATTCGCGTAATGTCGTTTCTGTCGTATTTAATGAACATTCTTGcataaagtgactttttttcccAATAATAAATTTCAAAA
>XM_043237576.1
CCTGTCTTGGCCAATGGGGCATGGTCATTAGGGCTGACCAGAGCGGGCCCCGGCATATAAGAAGGGCCGTATGGCACCAGAGAAACCACATCACTCACTGATCACCTACGACCACACAAACCCAAACAATCATGGACGTATTCTCTACATCCCAGATCTTCTACGATAGCGCTTGCGCCTCGTCGCCTGAAGCTTTGGAGTTCGGTCCCGGAGGTGAACTGGCCGGGTCTGAAGAGGACGAGCACGTCCGGGCCCCCGGGGCCCCGCACCAGCCGGGTCACTGCCTTCAGTGGGCCTGCAAAGCTTGTAAGCGCAAAGCCAGCACGGTGGACCGCCGGAGAGCCGCCACTATGAGGGAGCGCCGCAGGCTGAAGAAGGTGAACCACGCGTTCGAGGCACTACGCCGCTGCACCTCAGCGAACCCCAGTCAGCGTCTTCCCAAGGTGGAGATCCTGAGGAACGCCATCCAGTACATCGAAAGCCTTCAGGAGCTCCTCAGGGAACAGGTGGAGAACTACTACAGCCTGCCTATGGAAAGCAGCTCTGAGCCCGCCAGCCCTTCCTCGAGCTGTTCTGATAGCATGGTTGACTGCAACAGTCCTGTATGGCCTCAGATGAATCCAAACTTTGGGAACAACTACAACTTCGAAGCACAAAATGCTAGCGCAATGGACAGAGCTCCCGGAGCGTCCAGTTTGCAGTGTTTGTCCAGCATCGTGGACAGGCTGTCCTCTGTAGATACAGGAGTTGCAATGGGAATGAGGAACATGGTTGCTCTCTCTCCAACTGGAAGTGATTCCCAGTGCAGTTCTCCAGAAAGTCCCAGCAACAGACCGGTCTACCACGTCCTGTGAGAGGGAGCGAGACGCTCTGCGGCACCCGTTCACGTTGCATGTTCATTTATGAAGTCTTTCGGATCGTTTGATAATGCTTTCAGATACCAATAAGAATGTAGTCATTGCAAACCTCCATGCATCACAGTGACAACGATTTGCCTTCAAAATCACGGCTGAAATGCGAAACAAAGGCTTGGTTATAATATGTGACCATGCTTTAAAAAAGCCGTactatgcataaaaaatatgtcaCACAGTGGATGTTTTTTACCATGTTGACTGGCTGTACAGCTGTACTGCATCGAAActggttttatttaatcattgaGGTACTGTATTGTAATATTAGCCAACTTAATGTTATCCACGACCTACCATCATTTGTGTTGTAAATAAGATtgtacataatttaaataactgttattGTATTCGCGTAATGTCGTTTCTGTCGTATTTAATGAACATTCTTGcataaagtgactttttttcccAATAATAAATTTCAAAAGTTGTATTTAATGA

Function

NR:

description
PREDICTED: myogenic factor 5

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0043282 pharyngeal muscle development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002074 extraocular skeletal muscle development biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K18484 MYF5; myogenic factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU41185 False 874 lncRNA 0.41 2 11333473 11334442
XM_043237576.1 True 1358 mRNA 0.49 3 11331545 11334456

Neighbor

gene id symbol gene type direction distance location
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 4852 11324633 ~ 11326693 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding upstream 174801 10998929 ~ 11156744 (+)
nav3 nav3,LOC107755908,LOC107680031 coding upstream 348731 10857085 ~ 10982814 (+)
LOC122342682 NA coding upstream 605280 10722325 ~ 10726265 (+)
LOC122342683 NA coding upstream 611344 10717753 ~ 10720201 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding downstream 239291 11573747 ~ 11575237 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding downstream 267745 11602201 ~ 11606571 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding downstream 283605 11618061 ~ 11652758 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding downstream 406276 11740732 ~ 11783807 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding downstream 680130 12014586 ~ 12018965 (+)
G27778 NA non-coding upstream 31414 11297247 ~ 11300131 (+)
G27777 NA non-coding upstream 34741 11276429 ~ 11296804 (+)
G27760 NA non-coding upstream 152234 11178522 ~ 11179311 (+)
G27754 NA non-coding upstream 153502 11176424 ~ 11178043 (+)
G27731 NA non-coding upstream 672214 10648692 ~ 10659331 (+)
G27789 NA non-coding downstream 3885 11338341 ~ 11367704 (+)
G27801 NA non-coding downstream 95506 11429962 ~ 11434331 (+)
G27805 LOC107590700,LOC107590977,LOC107694182,LOC107755902 non-coding downstream 108768 11443224 ~ 11444716 (+)
G27825 NA non-coding downstream 262839 11597295 ~ 11597703 (+)
G27826 NA non-coding downstream 263416 11597872 ~ 11598315 (+)
LOC122342850 LOC107740709 other upstream 622598 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 629342 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 656435 10662231 ~ 10675110 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other upstream 823991 10479441 ~ 10507554 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other upstream 963620 10365712 ~ 10367925 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other downstream 51674 11386130 ~ 11416227 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 354858 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 462526 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 1816280 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1971213 13305669 ~ 13315684 (+)

Expression


Co-expression Network