G27801


Basic Information

Item Value
gene id G27801
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11429962 ~ 11434331 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41201
CACGCAACAACTGTAGGACCGTCCCACTGAGCAAAAGGTAACCCTTTTCTTCTGGCTTCTTCCAACAACTCGtgtcacttttttttaagcctGCGATCTTTCTCTGCCTGCGTTCCCAGCTTTCCCACAGCAATATCCTGACCTAGAAGCTCAGGATCGGATACATTCCCTACTGATGGAGAAGATCCATTAACCAATCATTTGATACAATTTGAAATTATACTGATGTCCGACTCTAGAtcagtgttttaatcagattaaaTCTATATTGAGTTTTCTGTGATATATAGGTATACAAAACTCTTAATATCTCACTATGTCTATCATATTTTGATGTTCTTACCTTGTCCTGGTCCCATAATCTCTTTCCCCAGCTGCCCCAGTCTGGCCTTCTCTTTCTTCCCAAACAGGCGTCCGATGGAGGACTTGATGCCCTTCTTCTTTGGCTGTTTATGGAGGGAGTCTTGACTGCTGGCTACGCTGCTCAGAGCACTGGCCTCCGTCTCTAATGCAGCTGTCAGGCTggagacagacaaacagattaACAGCGGGAAAGTCAGGTTATGTTTGTACG

Function

NR:

description
protein transport protein Sec61 subunit alpha-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41201 True 574 lncRNA 0.44 2 11429962 11434331

Neighbor

gene id symbol gene type direction distance location
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 103269 11324633 ~ 11326693 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding upstream 273218 10998929 ~ 11156744 (+)
nav3 nav3,LOC107755908,LOC107680031 coding upstream 447148 10857085 ~ 10982814 (+)
LOC122342682 NA coding upstream 703697 10722325 ~ 10726265 (+)
LOC122342683 NA coding upstream 709761 10717753 ~ 10720201 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding downstream 139416 11573747 ~ 11575237 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding downstream 167870 11602201 ~ 11606571 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding downstream 183730 11618061 ~ 11652758 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding downstream 306401 11740732 ~ 11783807 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding downstream 580255 12014586 ~ 12018965 (+)
G27789 NA non-coding upstream 62258 11338341 ~ 11367704 (+)
G27778 NA non-coding upstream 129831 11297247 ~ 11300131 (+)
G27777 NA non-coding upstream 133158 11276429 ~ 11296804 (+)
G27760 NA non-coding upstream 250651 11178522 ~ 11179311 (+)
G27754 NA non-coding upstream 251919 11176424 ~ 11178043 (+)
G27805 LOC107590700,LOC107590977,LOC107694182,LOC107755902 non-coding downstream 8893 11443224 ~ 11444716 (+)
G27825 NA non-coding downstream 162964 11597295 ~ 11597703 (+)
G27826 NA non-coding downstream 163541 11597872 ~ 11598315 (+)
G27827 NA non-coding downstream 165414 11599745 ~ 11602035 (+)
G27836 kmt2e,LOC107590817,LOC107710662 non-coding downstream 219141 11653472 ~ 11654957 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 13735 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 95506 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 721015 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 727759 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 754852 10662231 ~ 10675110 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 254983 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 362651 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 1716405 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1871338 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1888957 13323288 ~ 13530631 (+)

Expression


Co-expression Network