gnai1 (gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493)


Basic Information

Item Value
gene id gnai1
gene name gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11796982 ~ 11815305 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41311
gtgttttttttttttttatatatatatatatatatatatatatatatatatatatatatatatatatatatacgctgaTGTATTGAAAGCTAATGGTTAACAGTGAGCGGTGGTCCAAACCTTCTGGGTCTCCATGGCAACAAGAGTAGACCAAACAGCCACTTCAGATGGAGATGAGTCCTGTTCAGCTGTCAAGCGCTGAGACGCTCCACATACAGGACTTGAAATCGGTCTCTCAAGCACCTGTCATCAGACACTGGCCGCCATTTTAATGGCTTACCGCTCGGAGAATTATGCGCCATCGAGAGATGAAGAGACTGAGAAGGGGTTGGgatttcattgaaaaaaaaaaaaacaaaaaacaatatgatAATGTCTGCAAACAGACATTTGAGGCAAGCGATACTGTTgattgattttgaaaaaaaactgccACCTTTGTCTGTGTGTTCTCCATATTGGGGGAACATTTGTACACTCATTTCCCTTATTTTGCTAATAAAAGGCATTTACTTCCTGA
>XM_043236689.1
GCGAACAGGAAGCGGCGCGTGCCCGTGAACACTGACGCGCTGGGGAACGGATCGCGACGCGTTTACGGATCTTTTTTCATCCCCTTGAAGACGTTTACGGCGGAAACAACACAAAACCCCGGCGCAGTCTCGAACCACCGAGGCGAGAGCCAGACCGTACCGGCGACCTTTCGATCCTCGAGAGCCTCTTTTTTCGCGCTCGCTCCttggtttttcttttctaaagaAGGGCGTGTGGTTTTCCGGAGAGAGGGCTGGTGCATGTTGAATACTGCGCGTGAGGTTTAAACGGTTCGGATCGTCGCGAGGATGGGCTGCACGTTAAGCACCGAGGATAAGGCGGCGGTGGAGAGGAGTAAGATGATCGACAGAAACCTGAGAGACGACGGAGAGAAAGCGGCCAGAGAGGTCAAACTCCTGCTGCTCGGTGCTGGGGAGTCTGGGAAAAGCACAATAGTCAAACAAATGAAAATCATCCATGAGGCAGGCTACTCGGAGGAGGAGTGCAAACAGTACAAAGCTGTTGTCTACAGCAACACTATTCAGTCTATCATCGCCATCATTCGTGCCATGGGGCGACTCAAGATCGATTTTGGAGATGCAGCGCGAGCGGATGATGCGAGGCAGTTGTTTGTGTTGGCGGGTAGTGCTGAGGAGGGTTTCATGACAGCCGAGCTGGCTGGAGTGATAAAGCGTTTGTGGAAAGACGGAGGAGTGCAGGCCTGTTTCAGTCGATCCAGAGAGTACCAGCTCAATGATTCTGCAGCATACTACCTGAACGATTTAGACAGAATATCGCAGGCCACCTACATACCCACTCAGCAGGATGTGTTGAGGACCCGAGTCAAAACCACAGGCATTGTCGAGACACACTTCACTTTCAAAGACCTCCACTTCAAGATGTTTGACGTCGGTGGTCAAAGATCGGAGAGGAAAAAGTGGATCCACTGTTTTGAAGGTGTAACCGCCATCATCTTTTGTGTGGCGCTGAGCGATTACGACCTGGTGCTGGCCGAAGATGAAGAGATGAACCGAATGCATGAGAGCATGAAGCTGTTTGACAGCATCTGCAACAACAAGTGGTTCACGGACACCTCCATCATTCTGTTCCTCAATAAAAAGGATCTGTTTGAGGAGAAAATCAAGAAGAGCCCGCTCACCATCTGCTACCCAGAATACGCAGGGTCAAATACATACGAAGAGGCTGCCGCATACATTCAGTGTCAGTTTGAAGATCTGAATAAGCGGAAAGATACCAAGGAAATCTACACTCACTTCACCTGCGCCACCGACACCAAGAACGTGCAGTTTGTCTTTGACGCGGTGACCGATGTCATCATCAAGAACAACCTGAAGGACTGCGGACTCTTCTAGAAGCTGGCATGTATCTGgtgCAATTGAAGCCAGCTTTGATGTGCATTTTGTTGGAGAAAGATTGCAAGACCAAGTACGGAGAAAACTGGTCTTGGACAAGTGCTGTACATTACGCCACTTTGTCAGCTTTATTTATGGTTTTCGTCTCTGGAAATTTTAAACcgtagcatttaaaaatgaattgtgtCGAATGTTCGTACAGTCGTTGCTGTTGCAGCCATGCTGTTTACTTTCACCCTGAcaaaagtttgtttattttaaacgagggatttctttttattttgctttcttgCATCACAGGAGTTCCCCTTTacttgtaaaatgttacattatttttttgggGAGGGGGTTTGCCTTTGCGGTTGTTGCTATGGGGAGAGAGGAAGATTGTGCTTCTCCATCCGGTTTGTTGGTTCTCGTGCCTTCGCATGCGTTTCTGCGGTCTTTGTCCATTTGCTTGGGTTTGCCTGCCGAATATCTCTCCAACGTCAAAAAAATTTCATACTGGATATTACCAATCTGAGAGCACAAATCCTCATATGCATCGaatgtgagcatgtgtgtgagagagagagagagagagagagagcgagagagtgagagtgtgtgtgtatctgttttgtgtgtgtatgtttgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacgctgaTGTATTGAAAGCTAATGGTTAACAGTGAGCGGTGGTCCAAACCTTCTGGGTCTCCATGGCAACAAGAGTAGACCAAACAGCCACTTCAGATGGAGATGAGTCCTGTTCAGCTGTCAAGCGCTGAGACGCTCCACATACAGGACTTGAAATCGGTCTCTCAAGCACCTGTCATCAGACACTGGCCGCCATTTTAATGGCTTACCGCTCGGAGAATTATGCGCCATCGAGAGATGAAGAGACTGAGAAGGGGTTGGgatttcattgaaaaaaaaaaaaacaaaaaacaatatgatAATGTCTGCAAACAGACATTTGAGGCAAGCGATACTGTTgattgattttgaaaaaaaactgccACCTTTGTCTGTGTGTTCTCCATATTGGGGGAACATTTGTACACTCATTTCCCTTATTTTGCTAATAAAAGGCATTTACTTCCTGA

Function

symbol description
gnai1 Predicted to enable G protein-coupled serotonin receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in barbel; brain; gill; lip; and sensory system. Orthologous to human GNAI1 (G protein subunit alpha i1).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(i) subunit alpha-1

GO:

id name namespace
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031821 G protein-coupled serotonin receptor binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04630 GNAI; guanine nucleotide-binding protein G(i) subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU41311 False 520 lncRNA 0.37 2 11803132 11815305
XM_043236689.1 True 2530 mRNA 0.46 9 11796982 11815305

Neighbor

gene id symbol gene type direction distance location
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding upstream 13175 11740732 ~ 11783807 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding upstream 144224 11618061 ~ 11652758 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding upstream 190411 11602201 ~ 11606571 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding upstream 221745 11573747 ~ 11575237 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 470289 11324633 ~ 11326693 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding downstream 199281 12014586 ~ 12018965 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding downstream 205316 12020621 ~ 12027468 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding downstream 258398 12073703 ~ 12147286 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding downstream 354822 12170127 ~ 12267756 (+)
itih5 itih5,LOC107675976,LOC107555826 coding downstream 1350435 13165740 ~ 13175798 (+)
G27862 NA non-coding upstream 11130 11752668 ~ 11785852 (+)
G27851 NA non-coding upstream 108042 11685713 ~ 11688940 (+)
G27850 NA non-coding upstream 111846 11684883 ~ 11685136 (+)
LOC122343275 NA non-coding upstream 118312 11674000 ~ 11678670 (+)
G27836 kmt2e,LOC107590817,LOC107710662 non-coding upstream 142025 11653472 ~ 11654957 (+)
G28077 NA non-coding downstream 170047 11985352 ~ 11986186 (+)
LOC122342766 NA non-coding downstream 174566 11989871 ~ 11991884 (+)
G28094 NA non-coding downstream 203798 12019103 ~ 12019422 (+)
G28095 NA non-coding downstream 204191 12019496 ~ 12019766 (+)
G28104 NA non-coding downstream 332833 12148138 ~ 12155255 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 105853 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 380755 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 462526 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 1088035 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 1094779 10686097 ~ 10702203 (+)
kin kin,LOC102791470 other downstream 1335431 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1490364 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1507983 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 1590624 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 2067589 13882894 ~ 13961098 (+)

Expression


Co-expression Network