cacna2d4a (cacna2d4a,cacna2d4,LOC107694142,LOC107738821)


Basic Information

Item Value
gene id cacna2d4a
gene name cacna2d4a,cacna2d4,LOC107694142,LOC107738821
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10484922 ~ 10522249 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41360
ATAATGCATCGGTGAAATGCGACCGGATGAGATCTCAGAAGATACGAAGAAGGCCCGAGTCTTGTCATGCATACCACCCTCAaGAAAATGCTAAGGACTGCGGTGGGGCCGTGGCAATCAGCTTGTCCGTCGCGCTCTTCCTAGCCTGTTTATCAGTTTCTACGCTCACCCGGCGATGACGGAGGACCTGTTAAACTCAACCTGCTAGAAATAATACGAGATGACTAGACTAGAACGGTGCAAAGTCTTCCACATTAGTTATACGTAGCAAAAGGTCTTTGGAAAATCGGTGTTATCAAAGAGGATGGATGGAAACGAGAGCTAGACCGGACGGCAGCTGGGCTTCGGAGGAGAATTTATGGCCCGTAGTGACTTTATCTCTAATATAAAAGCAGAAGACGAAAAATGACCATTATGACcttgtttattgtttgaaaaaattatGTCTTGTATTTAAAACTTTGATTTTAGTCGTCTGTCCTCCGacttgcacaaaaatattttattactatgcATTATTATCACAACAGATTACAAATCTCTGTCAGAGTAAATTACAAAAGTGCGTCATGTTTACTTtcttacattaaatatattgtgatGCTAACAGGAAGAGTTAGCATGGCTTTTCACATTTCTTCTCTCGAccattatgtaaaataaaaatgaacattatgaCCTTCATTGTTGTTACGGGAATTTGAGAACTTTTGTCTTGTATTTAAAACTTTGATTTTAGTCGTCTGTTCTCCAacttgcacaaaaatattttttaacaattattattgcTATGCATTATTGATGCAATGTATTATAAATCTCTGTCACTCTTTCGTTTGTTTTCTCGCTCAGGTATTGTTATGtggttgttattttttttcaaatgctgaTGTTAATGACACTGATCATTGCAGGAATCCCATGTGTCTTACTGTACACCTAaaacttaattataaaatgtttttgagttAAAAGGTGAACGTTGGCGATCTATgctgaaataaagaaagaaccAAG
>XM_043236581.1
tgtAGCACCGTGATCCTGCGAGAAACGACATTTCAATCCGCCTTATGTCCACACGTGTAGTGGAATGACAATAAAGCTCGACTTCACTTGATATCTGAAAATTTTGaatcagaatagtccatctgccatcggtggttcaaccataatgttatgaagcaacaagaatactttttgaatgcaaagaaaataaaaataacgacTTCATTCAACAGTTTGTACACTGAAGGCAGATGGgactattctgatgatgtcttttATACTTTACTGGGCCTTTACAGTCAATGcgtcaatttaaaatatcttaaaatgtctTCCAAAGACCACAGGTGTGGAACGACACGGGGGTAAGTGATGACAAGTGccaaaagtttcattttgggatggagtaaccctttaagacgACTAAATATTTAGCATCATTTGTGCACGGATTCCCCTCGTGCTTCAGTGTCCAAACAAACTATATGTGTTTGAGAAAGTTGCGAGCTTTAGTTTCCTTCTTTTTGGACAGGCCGTCTCCAGAAACACCAATAATCCTCCTCAAGTCATCCTTTTCTCTTTCACTTTATCTCTCTATTCCAATACGTCAGCCCCTCACCCACCGTACAtcttctccgtctctctctctctctctctctctctctcccactgtGGGAGCGAAGTGTAATCCATGTGGATTATCATAGTGGGGAGGGCAAACCGAGTGCGTGAGTGTATCTGCTTCTGTTTCACTTCCTCCCAGCTGCGTTGAACATGAGGGTGAGAGAAGCCGAAAGACAGGTGAAACCGCAAAAGTCAGTCAGTCCGAGTCATTCACCATCGGGGAGACTCCTGGAGGATTCATACAGACTCTGAGGAAGAAGGAGCGTGATGAGGAGAATGAGGAAAGGATGAGATGCAAGCATCGAGAGGGGATGATCAGGAACGGGGAGAAGAGAGCCGGATGTCattatttcagaagaaaaatctgGGAGGTTTTCTGTGTCacccaaaaacacacttttgaaGCTTCCGGGGCGTCTTTTGGGCACAGTTTGATATCAAGAGCGGACTGGGATTACCGCACGAGGTCTGTCTTCAGGAGCCGGTGAGCTGGAGATCGTACACGCTGCTGTTTTATGCACGTGGCAGGGGTTGATGGGTAGGATGAGGAGCGTTGCACTGCTCTGGGTGCTGTTTTCAAGTTGGACCATCCAAACACAAGCTCAGATGAGGATATCACCTGAAACGGTTCAACAGTGGGCCGAAGCCTTTGGAAAACAGCTTTTGGCCTTGTCAAACAGATACTCAGGCGCTCAACTCTTACAGAAGAAATATAAAGATGTGGAGCCCATAGTCAAGATGCAGGAAGTGGATGGTCTAAAAATGGTGAAGGAATTTGCTGAAGACATGGAGAACATGCTGGGCAGAAAGATGAAATCAGTGAAGAGAATGGCTGAGACAGTAGAGGATGCCGATTTTTATCACGAATATAATGCAACATTAGAGTTTGACTACTACAATTCCATGATGATTAACACTTTAGACGACGACGGGAACTACGTGGCCCTCGGGGGTGAATTTCCTCTGGAGGAGAACGAACACTTCAACAGACTGCCTGTCAGTACCCAGCAAAGCGTCATACAGGTGCCCACCAACGTCTACAACAAAGATCCCGATATTCTTAACGGGGTGTTTATGTCAGAAGCGCTGAATGACGTGTTCACCAGCAACTTTGAGAAAGACCCGACTCTAACCTGGCAGTACTTCGGCAGTTCGACGGGATTTTTCAGACTTTACCCCGGTATCAAGTGGACACCTGATGAAAATGGAGTCGTCACTTTTGATGGCAGGAATCGCAACTGGTACATCCAGGCAGCCACGTCCCCCAAAGACATCATCATCGCTGTGGACATTAGCGGTAGTATGAAGGGTTTGAGGCTCACCATTGCTAAACACACCATCAACACCATTCTAGACACACTTGGTGAAAATGACTTTGTCAACGTCATTGCGTACAGCGATTACGTCCGGTATGTAGAGCCCTGTTTTAAAGGCACGCTGGTCCAGGCCGACCTGGATAACCGCGAGCACTTCAAACTTTTGGTGGAGGAGCTGCAAGTGAAAGGAGAAGGGAAGGTGAAGAAAGCCATAAAAGAGTCCTTCAAGATTCTCAACGAGGCAGCAGCGGAAGGCAGGGGGAGTTTATGTAACCAGGCCATCATGCTGATCACCGACGGAGCCATGGAGGATTTCCAGCAGGTGTTTGAAGAGTTCAACTGGCCAGAACGCAAGGTGCGAGTGTTCACATATCTGATTGGACGAGAGCTAACGTTTGCTGACAATGTCAAATGGATTGCCTGCAACAATAAAGGTTACTACACTCATATCTCTACTCTGGCGGATGTTCAGGAGAACGTGATGGAATATCTTCATGTGCTGAGCAGGCCAATGGTCATCAACCATGATCACGATATCATTTGGACAGAGGCGTACATGGACAGCGTGCTACCCAACACAGCAGAGctttTCAACACACAGGCACAGAGTTTGCTGTTGATGACCTCCGTGGCCATGCCTGTGTTCAGCAAGAAAGAAGAAACTCTGTCTCACGGGATCCTCCTTGGTGTGGTTGGCACGGATGTCCCTTTGAAAGAGCTCATGAGATTGGCTCCTCGATACAAGTTGGGAGTTCATGGCTACGCATTCTTAAACACTAATAATGGCTATATCCTCTCTCATCCTGACCTCCGACCTCTGTATAAAGATGGTAAGAAGCTGAAGCCAAAGCCGAACTATAACAGTGTGGATCTGTCAGAGGTGGAGTGGGAAGATACAGAAGACGCATTGAGAACAGCGATGGTAAAAGGGGAAAGTGGGACAATCTCTTTGGACGTCAGAGCAACAGTAGAGAAAGGAAAGAGAGTTGTTTTCctgaaaaatgaatatttttacactACCATTAATGAGACTCCATTCAGCCTCGGGATTGTACTTACCAAAGGTCACGGAAAGAATATTTTCATCGGAAATGTTTCAGTTGAAGAAGGCCTACATGACCTGACCGCTTCTGATGTCACTATTGCCAACGAATGGACATACTGTGAGACTGACATCGATCCACATCACCTCAAACTGACACAGTTTCAGGCTGTGGTTCGGTACCTAACAGGGAAAGAACCAGACCTGGAATGTGATGAAAGACTTCTGCAGCAGACTCTGTTTGACGCAGTGGTCACAGCTCCTATGGAAGCCTACTGGACCGCTCTGCTGCTCAACGCCTCCGGCATCGATGGGGGTGTGGAGACGGCGTTCCTGGGCACGCGCTCCGGCCTCACCAGAATGATCAGATACGTCGGCGTAGAGAAACGCGTGGCGAAaaaattcTTATCTCCATCGGATAAGGAGAATATTTTTACTCTGGACCATTTCCCTGTTTGGTATCGTCGCGCGCCGGAGAATCCGTCTGGACGATTTTTGTACTATGTCCCTGTAGAGGAGAGCACGCAAGTGGATGGCAGATTTGTGATTGCCGTCACGTCCGTTACGGTCTCTGTGAACAAAAAGACAGCGGTTGCTGGAGCCATTGGCGTACAGATGACTCTTGAGATGTTGGAAAAAAGGTTTTGGTCCATAACTACACAGGGGAATGACACGGATTGTTCAGGTGTAGACGGGCTTTGTCCTCTAAGCTGTACCGATAATCCGGATGTTAACTGCTACGTCATTGACAGTAATGGCTTCATCATCATCTCTAAGGACAGGACTGATGTCGGCAAGTTTCTGGGGAAAATCGACGGGTCGGTGATGTCCCAGCTCTTGAAAATGGGCATGTTTAAGAGAGTGCTGCTCTACGACTATCAGGCCATGTGTAAGGTGAACCCTCACTACACCAGCGGCGCTCGACCCCTGCTAAGTCCCTTTTATAATCTTTTGGCAGCGCTGAGATGGCTCCTGTCGAACTTCCTGCTGTTTTTACTGGACTTCAACATCTACGGCCTGTGGCACTCGGATCCCTTCGCCGAGGCCAAGGCCTTGTTCCATGCATCTAGTAAGAAGTCGAAGGGGGACATTCTGCAGCCTTGCGACACTGAGTATCCCAGCTTCGTCTATGAGCCGTCGATCAAAGAAACCAACAGCATGATCAAATGTGGGAGATGTCAAAAGATGTTTGTAATCAATCAGGTTCCTGATAGTAACTTGCTGTTGGTGGTGATTCAGGCCGACTGTGACTGTTCCCGGCAGTACCCGCCCATCACCATGGAGCCCAAAGAGGTCAAATATAATGCATCGGTGAAATGCGACCGGATGAGATCTCAGAAGATACGAAGAAGGCCCGAGTCTTGTCATGCATACCACCCTCAaGAAAATGCTAAGGACTGCGGTGGGGCCGTGGCAATCAGCTTGTCCGTCGCGCTCTTCCTAGCCTGTTTATCAGTTTCTACGCTCACCCGGCGATGACGGAGGACCTGTTAAACTCAACCTGCTAGAAATAATACGAGATGACTAGACTAGAACGGTGCAAAGTCTTCCACATTAGTTATACGTAGCAAAAGGTCTTTGGAAAATCGGTGTTATCAAAGAGGATGGATGGAAACGAGAGCTAGACCGGACGGCAGCTGGGCTTCGGAGGAGAATTTATGGCCCGTAGTGACTTTATCTCTAATATAAAAGCAGAAGACGAAAAATGACCATTATGACcttgtttattgtttgaaaaaattatGTCTTGTATTTAAAACTTTGATTTTAGTCGTCTGTCCTCCGacttgcacaaaaatattttattactatgcATTATTATCACAACAGATTACAAATCTCTGTCAGAGTAAATTACAAAAGTGCGTCATGTTTACTTtcttacattaaatatattgtgatGCTAACAGGAAGAGTTAGCATGGCTTTTCACATTTCTTCTCTCGAccattatgtaaaataaaaatgaacattatgaCCTTCATTGTTGTTACGGGAATTTGAGAACTTTTGTCTTGTATTTAAAACTTTGATTTTAGTCGTCTGTTCTCCAacttgcacaaaaatattttttaacaattattattgcTATGCATTATTGATGCAATGTATTATAAATCTCTGTCACTCTTTCGTTTGTTTTCTCGCTCAGGTATTGTTATGtggttgttattttttttcaaatgctgaTGTTAATGACACTGATCATTGCAGGAATCCCATGTGTCTTACTGTACACCTAaaacttaattataaaatgtttttgagttAAAAGGTGAACGTTGGCGATCTATgctgaaataaagaaaga

Function

symbol description
cacna2d4a Predicted to enable voltage-gated calcium channel activity. Acts upstream of or within retinal cone cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in retinal inner nuclear layer and retinal outer nuclear layer. Orthologous to human CACNA2D4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4).
cacna2d4 Enables voltage-gated calcium channel activity. Involved in calcium ion transmembrane transport and detection of light stimulus involved in visual perception. Part of voltage-gated calcium channel complex.

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4

GO: NA

KEGG:

id description
K04861 CACNA2D4; voltage-dependent calcium channel alpha-2/delta-4

RNA

RNA id representative length rna type GC content exon number start site end site
TU41360 False 1017 lncRNA 0.37 2 10484922 10486071
XM_043236581.1 True 5272 mRNA 0.45 40 10484928 10522249

Neighbor

gene id symbol gene type direction distance location
stk38l stk38l,LOC107738822,LOC107590537,LOC107694172,LOC107699048 coding downstream 821 10477213 ~ 10484101 (-)
LOC122342626 gsap,LOC107733001,LOC107699053,LOC107557299,LOC107694141,LOC107591096 coding downstream 7941 10463761 ~ 10476981 (-)
fgl2a fgl2a,LOC107694171,LOC107590533,LOC107557300,LOC107733002,LOC107699052 coding downstream 33115 10448839 ~ 10451807 (-)
LOC122342631 NA coding downstream 36558 10446645 ~ 10448364 (-)
lrrc17 lrrc17,LOC107738820,LOC107694168,LOC107591338,LOC107699038,LOC107557290 coding downstream 51427 10423932 ~ 10433495 (-)
napepld napepld,LOC107738826,LOC107694176 coding upstream 115534 10637783 ~ 10645759 (-)
ints13 asun,LOC107590623,LOC107738827,LOC107589038,LOC107733003 coding upstream 154228 10676477 ~ 10685951 (-)
pawr pawr,LOC107694180,LOC107591114,LOC107755907,LOC107734443,LOC107680012 coding upstream 643019 11165268 ~ 11213298 (-)
ppp1r12a ppp1r12a,LOC107749073,LOC107755884,LOC107694147,LOC107680011 coding upstream 698287 11220536 ~ 11275588 (-)
rps16 rps16,LOC107590675,LOC103382554 coding upstream 774047 11296296 ~ 11298238 (-)
G27883 NA non-coding downstream 95117 10389447 ~ 10389805 (-)
LOC122343524 NA non-coding downstream 135631 10322734 ~ 10349291 (-)
G27628 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC107738809,LOC108432552 non-coding downstream 346866 10083419 ~ 10138056 (-)
G27627 NA non-coding downstream 469168 10015182 ~ 10015754 (-)
G27581 NA non-coding downstream 740135 9697696 ~ 9744787 (-)
G27910 NA non-coding upstream 127649 10649898 ~ 10659974 (-)
G27940 NA non-coding upstream 192381 10714630 ~ 10720284 (-)
LOC122342624 LOC107694146 non-coding upstream 408348 10930597 ~ 10932401 (-)
G27974 syt1a,LOC107590640,LOC107694178,LOC107734425 non-coding upstream 604253 11126502 ~ 11259483 (-)
LOC122343274 NA non-coding upstream 1096201 11618450 ~ 11648423 (-)
zgc:193726 NA other downstream 121356 10355711 ~ 10363566 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 1184743 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 1475618 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 1543519 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 1610324 8870215 ~ 8874598 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 2282 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 892471 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 1131221 11653470 ~ 11683862 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 1319716 11841965 ~ 11996639 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other upstream 1492382 12014631 ~ 12015767 (-)

Expression


Co-expression Network