G27940


Basic Information

Item Value
gene id G27940
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10714630 ~ 10720284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41414
ccaGAACGTTTACTGAAATATGGGATTTTCGACATAGCACAAGGGTCaggttataataataataataaagtaacacGATAAACGACGTTGACAGAGCACTTTATTGAACTTTACTgacaaaaataatgtgaaatcataaatcataaaatagtCCAGCAAgcaaagaaatgaaagagatttcatttataatgatattGGAGCTCTTTTGTTGgacatttaaatgcatctcCTGATGGATCCGTCGCTACAGATGACATACAGCCTTGCAGGGTAGCAATTCTTTATTGATATATTGACAATCATGAGGCATACATCTAACTGCTATTAGTAAATAAATTGTGCaaaggaaagaaaggaaaaactattttcattttcaacattcGGTTTATAATGAAACTGGAGCTCTTCTGTTGGACATTTAAACGCATCTCCTGATGGATCCGTCGCTACAGATGACATACAGCCTCCCCAGATCGTAAGTCACGTGCTTGTGGCCATTGGGACACACAAGGAAACCTAACCAACCCGTGCCGATGGGATTCGACGCCGAGACACCggttctaaaaACAAAGACCCCTGGGTGTCAATAGCGAAGACGCTGCCGTCGGTAGCTACTTCAACCATAGACATACTTCCAGAAATCACATCGAAAGCGCTCGCCCCTCCGCAGGAAGCACCCGATACAGACTGTACAACACATCAAAGAACACATCACGTGTTTTCAACTCATTTActgtaattagttttttatttaaagctgcatAGATTCTGAAAACTTAGTGGTGCACTTACTCTTCTGACGAGGATATTCCCTGCGGCGTTCACTCCCCAACAGCTGTACGGCCCACAGCTGTAGTACTTCAGCTTTCCCGCAAGCTGGACCCAGGCGAAATTGCTGGACGGCCCGACGTTGTTAGTATCCTTATTCAAGCAGAAGATATCATCTAGAGGAGTAACGCCAGCAATAATCTGGTCTCCGCCAGCATCCACCTGTTTAAAAGTGACTGACATTAAAATACAGAGAATGAGTGAAAAAGAAAcgcttttatattatatatttaaacatcgTCTTGTTGTACTTACTTGGAATCGAGGCGAACTGGCCGCTCTGAAACTTGAAGACGCTGTTTGATAAATTCACCGCCAGTTCTCCAGCGGGTCCGACAGAAAAGTGCTTCATGATTACGTTTATCCCTCTAAATTCATTCCCAAGCAACAGGAAGACTTCGTTGTCATCGTTCACCCCACCTACCACCCCAACACCggcatcaatctgcttcaggtTCCCCGGGATCACTTCACACTCCAAAGCTATGGGGAAAACATCGTGATATTGATTTTGCTAAATGCTCATATGTTCattaatcctaaaaaaatgaaagcgttCCTAGTTTACCTAGATAATAATGGAGCAGGCAGAGCAGCAGGAGGCACTGACAAACTTTCATCGTTCTTCAAGACAGGTCCTgtttctgaaaacaaatatgTCTGTAAAATTCAGGAAAAGCGTATAATCTTAGTACATCTGTCTTCCTAAATTCCAAACAACGCGGAGTTGCTTCTAGTTACGTAAAACATTGAGATTGTAATTGTAACACCGACGTTGTAGTATTATTAAATCAAGCCAACCTTTTCTATGGATTCAGTGTGATTCTCCTGCGCTCACTCTACAGGTGTTTGAAGACACTGCTGCTTGACACTTAGCTTATATAGCCACGCTTAATTTCCTGGTTCTGATACTGTATGTGGAAAGGGAAGTTGGGCAGATGTTTTAGAAGGATCTCTTCTAAAACACCCCTTACCCGTTTGTCTGCATGCCACGGTCTTGATATCACTGCCGCAGAGTGATTATAACTTGCTGGAAATCACCTCTTA
>TU41416
TCATGCAGGGTAGCAATTCTTTATTGATATATTGACAATCATGAGGCATACATCTAACTGCTATTAGTAAATAAATTGTGCaaaggaaagaaaggaaaaactattttcattttcaacattcGGTTTATAATGAAACTGGAGCTCTTCTGTTGGACATTTAAACGCATCTCCTGATGGATCCGTCGCTACAGATGACATACAGCCTCCCCAGATCGTAAGTCACGTGCTTGTGGCCATTGGGACACACAAGGAAACCTAACCAACCCGTGCCGATGGGATTCGACGCCGAGACACCggttctaaaCAGAAATCACATCGAAAGCGCTCGCCCCTCCGCAGGAAGCACCCGATACAGACTGTACAACACATCAAAGAACACATCACGTGTTTTCAACTCATTTActgtaattagttttttatttaaagctgcatAGATTCTGAAAACTTAGTGGTGCACTTACTCTTCTGACGAGGATATTCCCTGCGGCGTTCACTCCCCAACAGCTGTACGGCCCACAGCTGTAGTACTTCAGCTTTCCCGCAAGCTGGACCCAGGCGAAATTGCTGGACGGCCCGACGTTGTTAGTATCCTTATTCAAGCAGAAGATATCATCTAGAGGAGTAACGCCAGCAATAATCTGGTCTCCGCCAGCATCCACCTGTTTAAAAGTTTGGAATCGAGGCGAACTGGCCGCTCTGAAACTTGAAGACGCTGTTTGATAAATTCACCGCCAGTTCTCCAGCGGGTCCGACAGAAAAGTGCTTCATGATTACGTTTATCCCTCTAAATTCATTCCCAAGCAACAGGAAGACTTCGTTGTCATCGTTCACCCCACCTACCACCCCAACACCggcatcaatctgcttcaggtTCCCCGGGATCACTTCACACTCCAAAGCTATGGGGAAAACATCGTGATATTGATTTTGCTAAATGCTCATATGTTCattaatcctaaaaaaatgaaagcgttCCTAGTTTACCTAGATAATAATGGAGCAGGCAGAGCAGCAGGAGGCACTGACAAACTTTCATCGTTCTTCAAGACAGGTCCTgtttctgaaaacaaatatgTCTGTAAAATTCAGGAAAAGCGTATAATCTTAGTACATCTGTCTTCCTAAATTCCAAACAACGCGGAGTTGCTTCTAGTTACGTAAAACATTGAGATTGTAATTGTAACACCGACGTTGTAGTATTATTAAATCAAGCCAACCTTTTCTATGGATTCAGTGTGATTCTCCTGCGCTCACTCTACAGGTGTTTGAAGACACTGCTGCTTGACACTTAGCTTATATAGCCACGCTTAATTTCCTGGTTCTGATACTGTATGTGGAAAGGGAAGTTGGGCAGATGTTTTAGAAGGATCTCTTCTAAAACACCCCTTACCCGTTTGTCTGCATGCCACGGTCTTGATATCACTGCCGCAGAGTGATTATAACTTGCTGGAAATCACCTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41414 True 1875 lncRNA 0.42 3 10714630 10720284
TU41416 False 1463 lncRNA 0.44 3 10714630 10716610

Neighbor

gene id symbol gene type direction distance location
ints13 asun,LOC107590623,LOC107738827,LOC107589038,LOC107733003 coding downstream 28679 10676477 ~ 10685951 (-)
napepld napepld,LOC107738826,LOC107694176 coding downstream 68871 10637783 ~ 10645759 (-)
stk38l stk38l,LOC107738822,LOC107590537,LOC107694172,LOC107699048 coding downstream 230529 10477213 ~ 10484101 (-)
LOC122342626 gsap,LOC107733001,LOC107699053,LOC107557299,LOC107694141,LOC107591096 coding downstream 237649 10463761 ~ 10476981 (-)
fgl2a fgl2a,LOC107694171,LOC107590533,LOC107557300,LOC107733002,LOC107699052 coding downstream 262823 10448839 ~ 10451807 (-)
pawr pawr,LOC107694180,LOC107591114,LOC107755907,LOC107734443,LOC107680012 coding upstream 444984 11165268 ~ 11213298 (-)
ppp1r12a ppp1r12a,LOC107749073,LOC107755884,LOC107694147,LOC107680011 coding upstream 500252 11220536 ~ 11275588 (-)
rps16 rps16,LOC107590675,LOC103382554 coding upstream 576012 11296296 ~ 11298238 (-)
lin7a lin7a,LOC107755905,LOC107590687 coding upstream 618057 11338341 ~ 11376262 (-)
hcls1 hcls1,LOC107755885,LOC107694186,LOC107710670,LOC107680042,LOC105023407,LOC103459100 coding upstream 854891 11575175 ~ 11582303 (-)
G27910 NA non-coding downstream 54656 10649898 ~ 10659974 (-)
G27894 lrtm2a,lrtm2,LOC107738823,LOC107590570,LOC107694175,LOC107732983 non-coding downstream 151858 10446435 ~ 10562772 (-)
G27883 NA non-coding downstream 324825 10389447 ~ 10389805 (-)
LOC122343524 NA non-coding downstream 365339 10322734 ~ 10349291 (-)
G27628 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC107738809,LOC108432552 non-coding downstream 576574 10083419 ~ 10138056 (-)
LOC122342624 LOC107694146 non-coding upstream 210313 10930597 ~ 10932401 (-)
G27974 syt1a,LOC107590640,LOC107694178,LOC107734425 non-coding upstream 406218 11126502 ~ 11259483 (-)
LOC122343274 NA non-coding upstream 898166 11618450 ~ 11648423 (-)
G28029 NA non-coding upstream 965448 11685732 ~ 11688800 (-)
G27987 sema3c,LOC107710663,LOC107755880,LOC107680038,LOC107694195 non-coding upstream 1060675 11780959 ~ 11804910 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 181087 10524531 ~ 10533543 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other downstream 192381 10484922 ~ 10522249 (-)
zgc:193726 NA other downstream 351064 10355711 ~ 10363566 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 1414451 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 1705326 9004260 ~ 9009304 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 694436 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 933186 11653470 ~ 11683862 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 1121681 11841965 ~ 11996639 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other upstream 1294347 12014631 ~ 12015767 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other upstream 1745328 12465612 ~ 12489181 (-)

Expression


Co-expression Network