G27974 (syt1a,LOC107590640,LOC107694178,LOC107734425)


Basic Information

Item Value
gene id G27974
gene name syt1a,LOC107590640,LOC107694178,LOC107734425
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11126502 ~ 11259483 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41464
CTCCCCTTGAAGTGAAGTGCTGCTATAGTTAGATCCAAACGCTTCACGTGATGACTTGGGAGATAATCACTCATGGGCTtgcagctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtttaccCGAATGTTTTGATGGTTAAATCTGTGTGTAGGAAAACTCAACGGGAAAAAAACGGAGGAATCCTTAACAAGTTTACAGATGTTGAGCTCCAAACTACACACGTGTGCTGTGACCTAACCAGACTACGGTCGATGGATACATCATCTCGCCGCGTAGGGTcgcgttttttttccccctctctccctttctcttttttttgcccCTATCGAGAGATGCCGCCCGTTTAAACACTAGGGGATGAACATACAAGTATTGCACAGTGCTCAACAAAATGCTGTGTGAACTGACCCGCGAGAGTGACGGTTATCGTAAACCGCCGCTCTCTCTTCGTACTCTCGTGTGGTGTGATAGGGGGGGGATGGCAGCACGACGTCACTATAGTACAAGATGGCCGCTACCTACTGAAAACTACAACGCTAAGCACACACCGCAGTCACAGTGATACACAACTCAGTCCCTAAAGACTCCTATGGAATGACgaatagcttttttttcttccttttatttttaagtaacagTGCTATCACCTACACAGTAACATTGAAAACACTTAGAAACTCCTCCTGAAGCTAGCATCTAGTGTACGCGAGAGGTTCCTCCAAGATAACTCATGGTTTTAATGGACTAAACGTCTACTCGCCCTCTTGTTAGACCCGTAGTAAAGGACATTAGAATGTTATCACCTGTACAGACCATTAACTTTTACGGTTATTGTTAAAGATTCGCTAATGCTCGTGGCGTCCAAACCGGTCGGGGGCCGGTCCGCTTTCTTGCGCTATTGAACGAACTGACTTTTCTCGACGAGCAACTGTTCGTTCCTAGACTGTACAGTGCAAAACAGTAGCCACGGGGGAAGGGGTTGGCAGTAAAGCATGGCTAACTCTATTGTCACTGTGAAAAGGCAACAGAAAGCAAAAACTGCTGTTTAGGGCACCGTTGCGGCCAAAATACATTGTTCCCCGATGAACCGAAGCTACAACCACTATATGAGTGGCGTGTGCGTGGAGGGAGGAGTCGTGTGCTCCTCGTACCTCCCTGAAAACAATGGCAGTGTTTAAAAGCTCGcctctcctcttcttcctcctcctcctcatcgaCTCGCCGGGACAGAGCGCTTTAAAAGTTTCCGTCCCGCAACGTTTGATTACTTTTGATTGAAGGCAAGGGAGTCTCTTGAAAGACTCCCCGGTGTAAATAAATCCCCCCGTTACCCGGCCTTTAGCAAAGAtcgtaaaaaaaatcatgcaagtTACCAAAAATATTCAGACGTTGACTTAATCTAAAAAATAGTTGTCTTAAAGCTAGAGTCAAAACTCctggtttcatttttttttttttttccttcatttttttttttttttttttt
>TU41465
CTCCCCTTGAAGTGAAGTGCTGCTATAGTTAGATCCAAACGCTTCACGTGATGACTTGGGAGATAATCACTCATGGGCTtgcagctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtttaccCGAATGTTTTGATGGTTAAATCTGTGTGTAGGAAAACTCAACGGGAAAAAAACGGAGGAATCCTTAACAAGTTTACAGATGTTGAGCTCCAAACTACACACGTGTGCTGTGACCTAACCAGACTACGGTCGATGGATACATCATCTCGCCGCGTAGGGTcgcgttttttttccccctctctccctttctcttttttttgcccCTATCGAGAGATGCCGCCCGTTTAAACACTAGGGGATGAACATACAAGTATTGCACAGTGCTCAACAAAATGCTGTGTGAACTGACCCGCGAGAGTGACGGTTATCGTAAACCGCCGCTCTCTCTTCGTACTCTCGTGTGGTGTGATAGGGGGGGGATGGCAGCACGACGTCACTATAGTACAAGATGGCCGCTACCTACTGAAAACTACAACGCTAAGCACACACCGCAGTCACAGTGATACACAACTCAGTCCCTAAAGACTCCTATGGAATGACgaatagcttttttttcttccttttatttttaagtaacagTGCTATCACCTACACAGTAACATTGAAAACACTTAGAAACTCCTCCTGAAGCTAGCATCTAGTGTACGCGAGAGGTTCCTCCAAGATAACTCATGGTTTTAATGGACTAAACGTCTACTCGCCCTCTTGTTAGACCCGTAGTAAAGGACATTAGAATGTTATCACCTGTACAGACCATTAACTTTTACGGTTATTGTTAAAGATTCGCTAATGCTCGTGGCGTCCAAACCGGTCGGGGGCCGGTCCGCTTTCTTGCGCTATTGAACGAACTGACTTTTCTCGACGAGCAACTGTTCGTTCCTAGACTGTACAGTGCAAAACAGTAGCCACGGGGGAAGGGGTTGGCAGTAAAGCATGGCTAACTCTATTGTCACTGTGAAAAGGCAACAGAAAGCAAAAACTGCTGTTTAGGGCACCGTTGCGGCCAAAATACATTGTTCCCCGATGAACCGAAGCTACAACCACTATATGAGTGGCGTGTGCGTGGAGGGAGGAGTCGTGTGCTCCTCGTACCTCCCTGAAAACAATGGCAGTGTTTAAAAGCTCGcctctcctcttcttcctcctcctcctcatcgaCTCGCCGGGACAGAGCGCTTTAAAAGTTTCCGTCCCGCAACGTTTGATTACTTTTGATTGAAGGCAAGGGAGTCTCTTGAAAGACTCCCCGGTGTAAATAAATCCCCCCGTTACCCGGCCTTTAGCAAAGAtcgtaaaaaaaatcatgcaagtTACCAAAAATATTCAGACGTTGACTTAATCTAAAAAATAGTTGTCTTAAAGCTAGAGTCAAAACTCctggtttcatttttttttttttttccgtttttggAGGCTGAACCGTAAATTCCTCAACCCAATGAGTCCAACGACGAGAAAAGGAAGCGATTCACAAATTCAAGCTTCAAGGACACGATGGCTACAGCTCGTCCATTTACGGTTATCACAAAGGCGCCAGATCGGATTCGGGACGTTTCGGGAATCGAAGGACGGAAAACAAGAAAGAAGCAAACCCGGGGACCCGTTTTACTAAAAGTTAACAGCATCACcgtatgagaaataaaataaaaaaaaaggctgattGGTTTTTCGTCAAGTAAGAAGAATTCCTTCGATTAAAGTGGTTTAAGCGAAGCATACAGGTCCTCAGTTTGATAAATTAGTACAAAAAGTTCTTACGAAATCATGTGCTTGTATAATTGTCAGcagcatattatatttataccaTGAAACCATATTAGTTAATGGCCTTcgtgttcagtgtgtgtgtttatcgtGTACGATACATCtgtatgctatttttttttttttcttaagtaaaCATGAAGCGCAAACCGTCCTTTACGAAGTGAGTGTACCTCCACTAGCGTCTCGCAGGTTggaattctttaaatatttatatagagaTATATCGTATATTTTAGTGGAATGCAATAAGGTAAAATTCTTAAAtcccattatatatataatattggcTCTTCTATGTCagcatttacataatttaaaatagaacatCTTATTAAAAACATCAAGATATACACAGATTAGGAAACGGGTAacaacatacaaacacataaactAGAAATCATTTTCGTCTGCATACTGATATATACACCTGTGGTACAATAAATTCCTCCAGTCATGCGCTATCTATACAGATCATATTGCTTAAAAGAAGGGGGCATTTGGTCGGGGACTTTTAAGGTCGTAGATGGAGGTGAAACGACAAAGGACAGAGAAAGTTTATCGACGGAAGGAAGGGGGCGAGGGGTCGAACCCGACGTAACAACACAAGGGGGTGGTCCGAGAAGACACGAAATTAGAAGGGTGCATGAATCCTTAAATCACTGAGGTATTTACACGCACTGGGTAAAGAGCACTACATGGGCGGGTTTGTGGAAAGGGGACGGGGACGGGGGTTGGGCTCGGGCCGCTCTATTTTTTCTGAGCTGCCAGCAGGGCATCCACTTCCTCCTCCGGCTTGAGCACGTGCCACTGAGCGATGGGTCTCCTCGGGTTGGCCAGCATATCTGACCAGTGACGGAGCTCGGTGCCTGTGCTGTTCAAGCCCACAAACACTTTGCCGATGGCATCGTTCTTGCCAATCTTGTCATAGTCCAGAACAGTTATAACAACTTGAACTTTCTGCAATAGAAATTAGAGACACACATTTGTAATGTAACTTTTGTGACTTTCAGCTTGCTCGAACATGGTCATGATGGCGCTtggtaatgatgatgatgatggtgatgatgatgatggcgaTGATGATAAGCGTCgttgaaaagtttggggtcgggTACGATTTTGCATACCAAAATCTTGCATACAAAAAGTGCAGTACAAGCAGTAATACCggaaaatactacaaaaaaaataaccgttttaatatagttgacatttttaatatagatattacgaaaatttaatttattatattatattatattttggatgtgatcagtcattgcccagcacttaaaaatatagctaaattttttttttagacattctGACAAATGTAAAAGTACATTTGATAACTTAATGACGAGACCAACACatgtttttactgaaaatacaCACAGTGGTGCACACCACTGACCATTTTTCCAAATACCACTACAATTATGTCGGTGTAATGGTCTATTAAAGGGCCTGTTACTCTGTGGCAGCCTGGGTCTTTGAAGAGCTCGGCGGCAGATACCAAAGAAAGGCCAGCGGGTGCCACCAAAGAGGTCCGAACAACTCTGTAAATTGACTGAGAGCGGTGCGAGTTTGGGGGTCAAAGGTTCACTCTTAGCTTGCTTACTTTAAACCCGATCCACCAGCGCACGAAATGCAAGCAGACAATATGAATTAGCGTCCTCAGAGCCCTGATTATCCTTCGATCCACCTCTTCGCTTGGATTTCTCTGACCGGTGAGAACAGGCCTGGGGCCATTGTTCTCAGAAGCCAGAGCTAATTTGccatataatgaaatattgagAGAAGTACAATGAGCGAGGAACTGTTAGTTCGGGATAGCCACTTTTAGAAACGTCTGCTGCTTGGTGTGAATGGGATGGGAAAAAGGCCTCTATGGTTAATAGAGCCCCAGACACACTTTGAATTCAAAGCAGCTCGCTCAAAGCATAAAATGTATCCTTTGAACCATGAAATGCTAAATCAATTTGAAGCAATTTTATTCTTATTGCACTAGCAAGCATTGCATCCATTTTATTCTCTAACTAATTAGCAACAAAACTTTTGTAAAAGCCTCACGCTGAGCCTTATCCCATTTCACAAGTTACTTTTTCGTCTGTTGCTTGCCAATTAGTCACGATAAATTTCAACACAGGATTTGTTCAATTAGTGTTTGATGACAATAATGAAAATGGGAACTTGCGTTGGATTTGCAATTGCCGTGTTAGAGCTCGGTTTCAGTACactttaacaaaaaacaaaaacctgaaaTACCTGGATTTGTTCGAACGGCACTTCGAAACTGAAAGACTCGTTGTAGTAAGGGTTGAGGGTGTTCTTTTTGATtgtcgtcttcttcttcttcagccgCTTGCCGTTCTGCATCAGGTGAATCTTGACATAGGGGTCTAAAAACACACAGGTGCAGGACGTAGCATGAGATATTGCAGTTGTTTGTGTCGTATTTGAGCAGGTTACTGGGACCACTACTTCCAAAGGCACAACAGATGGCTTAAAGTGATTCAAAATAAGACcaaaaaatggtcaaaacacCTGAAATATGCaacaatttttcttattttgatttatt
>TU41466
TTCTGTATCAAcaggaaataaaacatttttattgaacatTTGTGTATATGAAGTTATATAACAACAGTCAGAAACTCCACAGAGTGAATCACTACACGAAGTGAAACGAAATCGTAAAACACCTCATCAAAATGAAGGTATACACAGCAATATAACTGTCGGCTCGTCCGCTGGGGGGCGAGCAGTATGGCAGGAAAAACACCCCGAACAGTTCTACAAGATTACAGAGAAAATttccacacacaaaaatactcAAGCAGGCAGTTGATATACACAAAGGCAACTAGGATCTCCCTACAGCATCAGATTCTAATTCTTTACACAGCTTTTTCTCGAAAGGTGGCTTTTCGTCGTCGTAGAGTATCGGAAGTTTGTATGCGCGTACTGTGCTGAGCGATCGGGCTTTTTGTCGTTGTCGATTCTTTTTTTCCAAGTCGTCGGAGCTGTCTGCGTGCTTTGGTAGGCTTCAGTAAAAGATAGCGTTGCTTTGCAGGGCTAGAAATGGCTTTTCAGACTACTTTACAAACCTCTGAGGTGCAACGAGCAATGCTGTCTTCTACTGTACTTCCAGTTCTACACCTAACGTGCAGACACCTGATAGTACGAAACGAGTGTGTCAGTTTGTGActctaaaactgcatttttatccTTGTTTTAGAAACAAGCCTATTGTATTAGGATATCATAAATACCTATATAAACCAGAGTACTTAAGTAATTCAGGTAATGTAGGAGTAGTGGAGTAATAATTGTACTTATAGTTGCGATTATACGTTTTGGAGTTCTTCTCTAGGTTCGCTCTTCTCCGACAGGGTAAGAAATCATATTCGGCTATGAATGAAACGCATGAATCAATATTTATTGCGACATTGAAATGAAAGTGCCAACTGTACTTGGTCCCACGATAAAAAGtagaaacaaaacacacagtcCATACTGTACATTCTGAGttccataataaatataaaatggtcTTCAATAGGGCACTAAAGGAACGATAACCAGGTATTAGTCATGAGTGTCATCATAACAGCGATAACGAAATGGTACAGCCAATCATATTAATAGTACAACAGATAGTTTCCATAACAAGATACAGTTCTCTTATATCCAGGTAAACTCAATAATGAGGAAATTATATCaggacaaatataaaaatatatatacacctatTCTGAAAGGGAAgggttttcatatatatatatatttatttatatatatgtatagatagatTATCTCATATTTGGGGTACatcctatgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatacatatacacgtatacatatatacacacacacgtttaccCGAATGTTTTGATGGTTAAATCTGTGTGTAGGAAAACTCAACGGGAAAAAAACGGAGGAATCCTTAACAAGTTTACAGATGTTGAGCTCCAAACTACACACGTGTGCTGTGACCTAACCAGACTACGGTCGATGGATACATCATCTCGCCGCGTAGGGTcgcgttttttttccccctctctccctttctcttttttttgcccCTATCGAGAGATGCCGCCCGTTTAAACACTAGGGGATGAACATACAAGTATTGCACAGTGCTCAACAAAATGCTGTGTGAACTGACCCGCGAGAGTGACGGTTATCGTAAACCGCCGCTCTCTCTTCGTACTCTCGTGTGGTGTGATAGGGGGGGGATGGCAGCACGACGTCACTATAGTACAAGATGGCCGCTACCTACTGAAAACTACAACGCTAAGCACACACCGCAGTCACAGTGATACACAACTCAGTCCCTAAAGACTCCTATGGAATGACgaatagcttttttttcttccttttatttttaagtaacagTGCTATCACCTACACAGTAACATTGAAAACACTTAGAAACTCCTCCTGAAGCTAGCATCTAGTGTACGCGAGAGGTTCCTCCAAGATAACTCATGGTTTTAATGGACTAAACGTCTACTCGCCCTCTTGTTAGACCCGTAGTAAAGGACATTAGAATGTTATCACCTGTACAGACCATTAACTTTTACGGTTATTGTTAAAGATTCGCTAATGCTCGTGGCGTCCAAACCGGTCGGGGGCCGGTCCGCTTTCTTGCGCTATTGAACGAACTGACTTTTCTCGACGAGCAACTGTTCGTTCCTAGACTGTACAGTGCAAAACAGTAGCCACGGGGGAAGGGGTTGGCAGTAAAGCATGGCTAACTCTATTGTCACTGTGAAAAGGCAACAGAAAGCAAAAACTGCTGTTTAGGGCACCGTTGCGGCCAAAATACATTGTTCCCCGATGAACCGAAGCTACAACCACTATATGAGTGGCGTGTGCGTGGAGGGAGGAGTCGTGTGCTCCTCGTACCTCCCTGAAAACAATGGCAGTGTTTAAAAGCTCGcctctcctcttcttcctcctcctcctcatcgaCTCGCCGGGACAGAGCGCTTTAAAAGTTTCCGTCCCGCAACGTTTGATTACTTTTGATTGAAGGCAAGGGAGTCTCTTGAAAGACTCCCCGGTGTAAATAAATCCCCCCGTTACCCGGCCTTTAGCAAAGAtcgtaaaaaaaatcatgcaagtTACCAAAAATATTCAGACGTTGACTTAATCTAAAAAATAGTTGTCTTAAAGCTAGAGTCAAAACTCctggtttcattttttttttttttttttttttttttttttttttt

Function

symbol description
syt1a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to act upstream of or within neurotransmitter secretion. Predicted to be located in chromaffin granule membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Is expressed in brain; epiphysis; olfactory bulb; and retinal ganglion cell layer. Orthologous to human SYT1 (synaptotagmin 1).

NR:

description
synaptotagmin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41464 False 1523 lncRNA 0.45 3 11126502 11259483
TU41465 True 4447 lncRNA 0.42 2 11151095 11259483
TU41466 False 2720 lncRNA 0.40 2 11126502 11156744

Neighbor

gene id symbol gene type direction distance location
ints13 asun,LOC107590623,LOC107738827,LOC107589038,LOC107733003 coding downstream 440551 10676477 ~ 10685951 (-)
napepld napepld,LOC107738826,LOC107694176 coding downstream 480743 10637783 ~ 10645759 (-)
stk38l stk38l,LOC107738822,LOC107590537,LOC107694172,LOC107699048 coding downstream 642401 10477213 ~ 10484101 (-)
LOC122342626 gsap,LOC107733001,LOC107699053,LOC107557299,LOC107694141,LOC107591096 coding downstream 649521 10463761 ~ 10476981 (-)
fgl2a fgl2a,LOC107694171,LOC107590533,LOC107557300,LOC107733002,LOC107699052 coding downstream 674695 10448839 ~ 10451807 (-)
rps16 rps16,LOC107590675,LOC103382554 coding upstream 36813 11296296 ~ 11298238 (-)
lin7a lin7a,LOC107755905,LOC107590687 coding upstream 78858 11338341 ~ 11376262 (-)
hcls1 hcls1,LOC107755885,LOC107694186,LOC107710670,LOC107680042,LOC105023407,LOC103459100 coding upstream 315692 11575175 ~ 11582303 (-)
golgb1 golgb1,LOC107694188,LOC107755883,LOC107590726,LOC107710669,LOC107590960 coding upstream 323279 11582762 ~ 11602022 (-)
orc5 orc5 coding upstream 347827 11607310 ~ 11617489 (-)
LOC122342624 LOC107694146 non-coding downstream 194101 10930597 ~ 10932401 (-)
G27940 NA non-coding downstream 406218 10714630 ~ 10720284 (-)
G27910 NA non-coding downstream 466528 10649898 ~ 10659974 (-)
G27894 lrtm2a,lrtm2,LOC107738823,LOC107590570,LOC107694175,LOC107732983 non-coding downstream 563730 10446435 ~ 10562772 (-)
G27883 NA non-coding downstream 736697 10389447 ~ 10389805 (-)
LOC122343274 NA non-coding upstream 358967 11618450 ~ 11648423 (-)
G28029 NA non-coding upstream 426249 11685732 ~ 11688800 (-)
G27987 sema3c,LOC107710663,LOC107755880,LOC107680038,LOC107694195 non-coding upstream 521476 11780959 ~ 11804910 (-)
LOC122342677 NA non-coding upstream 534800 11794283 ~ 11820297 (-)
G28033 NA non-coding upstream 539083 11798566 ~ 11815305 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 592959 10524531 ~ 10533543 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other downstream 604253 10484922 ~ 10522249 (-)
zgc:193726 NA other downstream 762936 10355711 ~ 10363566 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 1826323 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 2117198 9004260 ~ 9009304 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 155237 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 393987 11653470 ~ 11683862 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other upstream 582482 11841965 ~ 11996639 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other upstream 755148 12014631 ~ 12015767 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other upstream 1206129 12465612 ~ 12489181 (-)

Expression


Co-expression Network