LOC122342766


Basic Information

Item Value
gene id LOC122342766
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11989871 ~ 11991884 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41608
AACAGCTGAATGATGGCTCTAAGGTGGTGTTTGGTTCAGTTGTTAGCGCTATGTGTGCTGTCACAGTGGAGTAATTTGCTCCAGATCCCATGAGCGCTGATGTTGCAGCGAATTGGCTAGCAGTTTCAACAGCCAGTTTAACAAAGTAATCAGCAGTTTCCTTGGCTGTTTCAGCTTCAGAAACCAGTGGCGCAGGCAGAGCTCCTTGATAAACTCGCTCTAGCTGATTATGAGATCCAATGTGGACAACCTGGTATCAATGCTGCGGAATGTGAAACTATCAACTTCTGCTTTGATGGACAGCAGTGTTATGGCAGGGCAGTATAGGTACTCTGCTTCTTCTGTGGAAGTCAACTCCAGCAGTAGCTACCCCTGGACCCCCTCAGGGTGGAGCTTAAACTGGGCAATGGCCAACGTGTCAAAGGATTTGCAGAATGGGCTGAGGCCTGCGAGAGCCAGTGTTTGGGGTGTACATTTTGGAGAGATTTAACCCCAGCCTTGTCATGATGCTTGGATGTTGCTGTGCAACTTCAACCTCCAGTCTGCCCCAGTGGGACCTTCTGGTTGATGGATGCCCTTACCAAGATCATTACCTGACCACATTGGTGCAGGTCCCCCATGTTCATTGGTGCAACACCCCCCAGGTGTTCTATGTTCTAGGCTTCTGCACAAGCCATTTTAAGTGACCTAACATTGGGCACGACAAAGGTTGTCAAAATGAGGTTTATGCTTGACTAGAGGTGGGAGAACTGATTCTCTGATGCATATcagaattgtttgtttttcaatatGCTGTGTTTTACTTCAGGTATGCTTTCACTTATGCCATTTGGAATGCAGTATTAAATGCATGGAACTCGTATACTGACAAACTTTCACATGTGCTTTGTCCTTGTAGTGGCAAATTGCACTTGAGGTTTTTAAACCCTTCTATACAAACTTGCAGTCAATTGTGTTCAGAGCTGGACAAAACATCGCATATCAAAATAAATCCATGAATTAGTCTGAATGAAACCCATTAAAGCTGCCCCCGTCTGCTAGTGTCAGTATCAAATGGCAATAAAGGGGAAACCCATAACAAGCTCTGTAAACCTTCAGACGCTTGAACACTTATAAAAGTTAAGTATAGTAATACTGAGAATGTGAAGCAATACAGTTGATGACTATAATTGAATACTGAAACAAAAGTTCACAGCATTACTTTTAAGATAGCACTACAGCTACACAAAATTGCCAACAATAAACAAAGCCTAGAAACTCcaatctttaaaatgtaaagatgcattttcacttttgggttaACTATGAATTAAATTATGATTCACAAA
>XR_006250646.1
TGATGGCTCTAAGGTGGTGTTTGGTTCAGTTGTTAGCGCTATGTGTGCTGTCACAGTGGAGTAATTTGCTCCAGATCCCATGAGCGCTGATGTTGCAGCGAATTGGCTAGCAGTTTCAACAGCCAGTTTAACAAAGTAATCAGCAGTTTCCTTGGCTGTTTCAGCTTCAGAAACCAGTGGCGCAGGCAGAGCTCCTTGATAAACTCGCTCTAGCTGATTATGAGATCCAATGTGGACAACCTGGTATCAATGCTGCGGAATGTGAAACTATCAACTTCTGCTTTGATGGACAGCAGTGTTATGGCAGGGCAGTATAGGTACTCTGCTTCTTCTGTGGAAGTCAACTCCAGCAGTAGCTACCCCTGGACCCCCTCAGGGTGGAGCTTAAACTGGGCAATGGCCAACGTGTCAAAGGATTTGCAGAATGGGCTGAGGCCTGCGAGAGCCAGTGTTTGGGGTGTACATTTTGGAGAGATTTAACCCCAGCCTTGTCATGATGCTTGGATGTTGCTGTGCAACTTCAACCTCCAGTCTGCCCCAGTGGGACCTTCTGGTTGATGGATGCCCTTACCAAGATCATTACCTGACCACATTGGTGCAGGTCCCCCATGTTCATTGGTGCAACACCCCCCAGGTGTTCTATGTTCTAGGCTTCTGCACAAGCCATTTTAAGTGACCTAACATTGGGCACGACAAAGGTTGTCAAAATGAGGTTTATGCTTGACTAGAGGTGGGAGAACTGATTCTCTGATGCATATcagaattgtttgtttttcaatatGCTGTGTTTTACTTCAGGTATGCTTTCACTTATGCCATTTGGAATGCAGTATTAAATGCATGGAACTCGTATACTGA

Function

GO:

id name namespace
GO:0003006 developmental process involved in reproduction biological_process
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41608 True 1328 lncRNA 0.43 4 11989871 11991884
XR_006250646.1 False 858 lncRNA 0.47 4 11989881 11991424

Neighbor

gene id symbol gene type direction distance location
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding upstream 206064 11740732 ~ 11783807 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding upstream 337113 11618061 ~ 11652758 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding upstream 383300 11602201 ~ 11606571 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding upstream 414634 11573747 ~ 11575237 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 663178 11324633 ~ 11326693 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding downstream 22702 12014586 ~ 12018965 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding downstream 28737 12020621 ~ 12027468 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding downstream 81819 12073703 ~ 12147286 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding downstream 178243 12170127 ~ 12267756 (+)
itih5 itih5,LOC107675976,LOC107555826 coding downstream 1173856 13165740 ~ 13175798 (+)
G28077 NA non-coding upstream 3685 11985352 ~ 11986186 (+)
G27862 NA non-coding upstream 204019 11752668 ~ 11785852 (+)
G27851 NA non-coding upstream 300931 11685713 ~ 11688940 (+)
G27850 NA non-coding upstream 304735 11684883 ~ 11685136 (+)
LOC122343275 NA non-coding upstream 311201 11674000 ~ 11678670 (+)
G28094 NA non-coding downstream 27219 12019103 ~ 12019422 (+)
G28095 NA non-coding downstream 27612 12019496 ~ 12019766 (+)
G28104 NA non-coding downstream 156254 12148138 ~ 12155255 (+)
LOC122343506 NA non-coding downstream 346061 12337945 ~ 12340101 (+)
LOC122342723 NA non-coding downstream 468802 12460686 ~ 12462227 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 174566 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 298742 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 573644 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 655415 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 1280924 10707132 ~ 10708947 (+)
kin kin,LOC102791470 other downstream 1158852 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1313785 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1331404 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 1414045 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 1891010 13882894 ~ 13961098 (+)

Expression


Co-expression Network