cpm (cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712)


Basic Information

Item Value
gene id cpm
gene name cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12465612 ~ 12489181 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41785
GAGGCTGGAGTCGGTTGAACCCGCTGCGGTATGGAGCGAGACGCCTTCATTTCATCAATGACACGGGCAGGACGACGACGCACGAACTTTACGAACAACTCGCCGCTCGGTGTTATGACAAGAGACTAACTGAAGAACCAGGAGGACCTCAACAGTCTCGGAGAACCCGCCAGAGAACGCACGAGAGGTTTCCACGCTCTTCAGGATGGTCGTCCTCGCGCTCTGCCTGCTCTTGTGGTCCTGGCTGTCGTCCTCTCGCGGTCTGGAGTTTCGCTATCATAACAGCGTGGAAATGGAGCAGTACTTGAGAGGCATCAACAGGACGTTTCCTGACATCGCCCATCTGCACAGCATCGGCCAGTCCGTCGAAGgaAGAGAACTCTGGGTCTTAATACTGGGTCAACATCCCAGAGAACACAGGACGGGCATCCCGGAATTCAAATACGTGGGCAACATGCACGGAAACGAGGGATTGGCTGTTCTTCGAGGGACGTGATTGGGCGAATCCTGATGGGGACTTCTTTAAAAGGGCGACGCCCAAAAACATGGCGAGCTCAATTCGGCGTTTGCGGCTATGGCGTGATGAGCTCCGGATTCCACCACAGCCAACAGACCATCTACCTCCCTCGTCGTTATGTTTTTGTCGGTTTCAGTTAATAACAAAAGTGTAATGCTTAAGTAACCACTCTGGAGCGTAGGAGAGATctgccttttatttttgatataattttGCCGATGTGTTTTTGCCTAGGTAGTTAGGGAAGTTGATTTgtattttccttttcctttatCCTTaggtaatttatacatttttattttataaagctcttttggtttattttgacCTTGGGTCTCTCTGAAATCAATGCTcctatatattaattttacttgttaaactcaataaatactttaaaattc
>TU41786
GAGGCTGGAGTCGGTTGAACCCGCTGCGGTATGGAGCGAGACGCCTTCATTTCATCAATGACACGGGCAGGACGACGACGCACGAACTTTACGAACAACTCGCCGCTCGGTGTTATGACAAGAGACTAACTGAAGAACCAGGAGGACCTCAACAGTCTCGGAGAACCCGCCAGAGAACGCACGAGAGGTTTCCACGCTCTTCAGGATGGTCGTCCTCGCGCTCTGCCTGCTCTTGTGGTCCTGGCTGTCGTCCTCTCGCGGTCTGGAGTTTCGCTATCATAACAGCGTGGAAATGGAGCAGTACTTGAGAGGCATCAACAGGACGTTTCCTGACATCGCCCATCTGCACAGCATCGGCCAGTCCGTCGAAGgaAGAGAACTCTGGGTCTTAATACTGGGTCAACATCCCAGAGAACACAGGACGGGCATCCCGGAATTCAAATACGTGGGCAACATGCACGGAAACGAGGGATTGGCTGTTCTTCGAGGGACGTGATTGGGCGAATCCTGATGGGGACTTCTTTAAAAGGGCGACGCCCAAAAACATGGCGAGCTCAATTCGGCGTTTGCGGCTATGGCGTGATGAGCTCCGGATTCCACCACAGCCAACAGACCATCTACCTCCCTCGTCGTTATGTTTTTGTCGGTTTCAGTTAATAACAAAAGTGTAATGCTTAAGTAACCACTCTGGAGCGTAGGAGAGATctgccttttatttttgatataattttGCCGA
>XM_043236767.1
GTCACTACAGCTGCACCAAACACACGAGGCTGGAGTCGGTTGAACCCGCTGCGGTATGGAGCGAGACGCCTTCATTTCATCAATGACACGGGCAGGACGACGACGCACGAACTTTACGAACAACTCGCCGCTCGGTGTTATGACAAGAGACTAACTGAAGAACCAGGAGGACCTCAACAGTCTCGGAGAACCCGCCAGAGAACGCACGAGAGGTTTCCACGCTCTTCAGGATGGTCGTCCTCGCGCTCTGCCTGCTCTTGTGGTCCTGGCTGTCGTCCTCTCGCGGTCTGGAGTTTCGCTATCATAACAGCGTGGAAATGGAGCAGTACTTGAGAGGCATCAACAGGACGTTTCCTGACATCGCCCATCTGCACAGCATCGGCCAGTCCGTCGAAGgaAGAGAACTCTGGGTCTTAATACTGGGTCAACATCCCAGAGAACACAGGACGGGCATCCCGGAATTCAAATACGTGGGCAACATGCACGGAAACGAGgCTGTGGGCCGTGTGCTGCTGCTTCAGTTGATCGATTATCTGACCAGTCGTTACCTGAGTGACCACCAGGTGACACGTTTGTTGAACAGCAGTCGTGTGCACATCCTGCCATCCATGAACCCGGACGGCTTTGAGTCATCCGCCCGGGAATGCATGTATACGATAGGCCGGTATAATAAGAATGGAGTGGACCTGAATCGCAATTTTCCAGATGTCTTTGTGACTAATGCAGATCAGAAAAGGGAGGTGGAGGTGAGGGCTGTGATGGACTGGCTGAAGATGGAAACTTTTGTCTTATCAGCTAATCTTCATGGAGGAGCAGTGGTGGCCAGTTATCCATATGATAACAGTAATGGAGGAAGCGAGCTGCAGGGAGGCCAGAGCATCTCCCCCGACGACGACGTGTTCATCCACTTGGCAAAGACCTACTCCTACAGCCACAGCCAGATGCACAACGGAAACAGCTGCGATGACTTACAGGACTTCAGCCACGGCATCACTAACGGTTATTACTGGTATCCTCTAGCAGGGGGAATGCAAGACTATAACTACGTGTGGGCACAGTGTTTAGAGCTCACGCTGGAAATCTCCTGCTGCAAGTATCCTCCAGAGGAGCAGCTTCCTGGCCTGTGGACGGCTAACAAACCCGCACTACTGGCTTACATGCAGCAAGTGCACCTAGGGGTGAAAGGAGTGGTTGTGGACTCGTACGGGAAGCCTGTGCAAAACGCCGTAGTGGAGGTAGCGGGAAGGAGGAATCTTTGTCCCTTCAAAACGGATCGGAACGGGGAATACTACCGACTGCTGCTGCCCGGAAACTACACCATCAAAGTCACCTACCCGGGACACAAGACAGTCACCCAGATTATTCAAGTGCCATATGGTCCAGACACCTTTTCTGCGCTCACACACGACTTCCTCCTGCAAAACAGTGATTACAGCACGACCACACAATTCCCCGAGTCCTGCGGCACCCCGGCGCTGGGAACCCAGGAGAGCGACAGTGCCACCCTGCTGCCAGATGTCTTCACTACACTTACTTTATTCCTCCTCCAAAGACTGCTGATGCTATCCTGAGGGAGCAGACACACATTACGGACAAactctttttgcttttattgcacattttttccTGCCTTTTCTGCAAAATCGGACGGACGTAGCAAGTGTCGACTCGGAGCATGTAACACATCCACAACCCACTGTTGAAAAGGATACTTCTTGATGCCAAGTAGCAACTCTTTGACCAAAAACCTCAACCGCTTTACTTATAAACTAGCCttgttttactttacttttttacatttcaaaagtgGACCGATGAAGACTATGCGACTTGAAGGCTGCATATAACTGTTAGACGGTTTCTACTCGACTCGTCGAGCTGATCACCTTAATCTCATTTCTCCATTAACACGGTCTCCTCGCAGCTGTGTAACATGAAATAAAGCCAAATGAAACCCAGTGCTCTTTCTACCTCACAGTAAAAGACTGACGGTGCCTTCAATAAACGTGTCAAAGACAGGA

Function

symbol description
cpm Predicted to enable metallocarboxypeptidase activity. Predicted to be involved in peptide metabolic process and protein processing. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space. Is expressed in nervous system; neural tube; otic vesicle; and trunk vasculature. Orthologous to human CPM (carboxypeptidase M).

NR:

description
PREDICTED: carboxypeptidase M-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01296 CPM; carboxypeptidase M

RNA

RNA id representative length rna type GC content exon number start site end site
TU41785 False 918 TUCP 0.47 4 12481920 12489156
TU41786 False 736 TUCP 0.52 4 12482102 12489156
XM_043236767.1 True 2021 mRNA 0.51 10 12465612 12489181

Neighbor

gene id symbol gene type direction distance location
LOC122343505 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 coding downstream 34726 12413786 ~ 12430886 (-)
LOC122343504 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776 coding downstream 94442 12279641 ~ 12371170 (-)
nup107 nup107,LOC107590859,LOC107710680,LOC107694200,LOC107680040 coding downstream 625560 11830757 ~ 11840052 (-)
cd36 cd36,LOC107590984,LOC107680017,LOC107694198 coding downstream 672692 11785346 ~ 11792920 (-)
kdm7aa LOC107694190,LOC107590789,LOC107710674,LOC107590966,LOC107680036 coding downstream 755110 11691122 ~ 11710502 (-)
usp6nl usp6nl,LOC107669711,LOC107710686,LOC107572286 coding upstream 3173 12492354 ~ 12536326 (-)
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding upstream 49876 12539057 ~ 12671471 (-)
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding upstream 586035 13075216 ~ 13090835 (-)
taf3 taf3,LOC107555823,LOC107675973,LOC107578374 coding upstream 613134 13102315 ~ 13144908 (-)
atp5f1c atp5c1,LOC107728502,LOC107748457,LOC107555824 coding upstream 657473 13146654 ~ 13150706 (-)
G28130 NA non-coding downstream 196872 12265665 ~ 12268740 (-)
LOC122342788 NA non-coding downstream 227475 12236645 ~ 12238137 (-)
G28117 NA non-coding downstream 310361 12148132 ~ 12155251 (-)
G28086 NA non-coding downstream 446611 12018609 ~ 12019001 (-)
G28090 NA non-coding downstream 468309 11997013 ~ 11997303 (-)
LOC122342546 NA non-coding upstream 499526 12988707 ~ 13071520 (-)
G28349 NA non-coding upstream 738519 13227700 ~ 13227947 (-)
G28350 NA non-coding upstream 739913 13229094 ~ 13229319 (-)
G28353 NA non-coding upstream 753325 13242506 ~ 13245388 (-)
G28359 NA non-coding upstream 761470 13250651 ~ 13252034 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 449845 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 468973 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 781750 11653470 ~ 11683862 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other downstream 891846 11414720 ~ 11573766 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other downstream 1932069 10524531 ~ 10533543 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other upstream 687780 13176961 ~ 13186890 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 827751 13316932 ~ 13361938 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 922443 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 1203290 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 1326393 13815574 ~ 13831851 (-)

Expression


Co-expression Network