G28231


Basic Information

Item Value
gene id G28231
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13146387 ~ 13148707 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41852
AGAGTAACTTAATACCGTTTTAAGCAAAATACGTAAACGCCAGAGAGGCTTTATTGGAAGGATTGACCTTGCGTTCTGTTTTGGCAGACGTCTTCTCTTCAAATGCTCCGTGTATTGATAACCTCCGAGCGTAGCCGAGCCCGCGGCTTCAAAGAAGAGTTCAGGAGCTTTAATTCCGACGGAAAACAAGCATGAgacgcatttattttttcaagagCACATCAAAGCCGATTAGGACACACGCGCTAGAACTCAAAATGGACGGCGTTTCTCTGTAAGAGGTTTATTTTGTCTGATAATTGTACAAACAGAAGCACGTATACATTTATGAATTCTACACCGGGTGACGGAAACCGGAGAGCACGCGAGCCAGAACCGCTCCGAACGTCCACGGGGCTCCTCTTTAGAGCAGCGGCTCCAGAAATGATCTCAATGAGCTCCTTAGTGATGACGGCCTGGCGGGTTCGGTTGAAGGTCAGAGTCAGCTTGTCAATCATCTCAGCTGATagggggaaaaataaatacatattatgaTAGAGAATTTAAGCATTAGTAACGACCACACTTTAGCGAGGAACACGGGAAACCGGCCAGCTTTCAAACCGAAAGGAAGATTTCGTATAGGCCGACTCACAAGCGTTCTTGCTGGCGCTGTCCATAGCGGTCATCCTGGCGCTCTGCTCACTGGTGGTGGACTCCTTCATGCCGAAGTAGATGATGTTGACCAGAGCAAACTCCTGATAGTTCCTCAGCACGTCGGCGTCGATGTCGTCGTAGACGCCCATGTTTTCTGAACCGAACGCACGACAAATGAACCAGTGCCAGTGTCACTTGATCAAGCAAATATATAGTCAAACTCGGCACAATAAAGacaacaaaacaggaaatgatcaAATAAGGCTGTAATGATAATAGCAATGTACTGTTTTATTGGGATTACTTTCCTAAAACTGCATCAGTATTTTTTTGAATGCACTGATGTCTAAATGCTGTGATAtgtacacacatgtatatatatgcatgcacatgttgttgttaatattattattattattattattttatacgtCAGCCTAAAATGGTGCCTTggaatgttttaatgtattaattgcataaaatacatattttaaaggcTACAAGTGATCTTTGTGCAATTGCT

Function

NR:

description
PREDICTED: Golgi-associated PDZ and coiled-coil motif-containing protein isoform X2

GO:

id name namespace
GO:0048037 obsolete cofactor binding molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU41852 True 1159 lncRNA 0.43 2 13146387 13148707

Neighbor

gene id symbol gene type direction distance location
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding upstream 878631 12170127 ~ 12267756 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding upstream 999101 12073703 ~ 12147286 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding upstream 1118919 12020621 ~ 12027468 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding upstream 1127422 12014586 ~ 12018965 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding upstream 1362580 11740732 ~ 11783807 (+)
itih5 itih5,LOC107675976,LOC107555826 coding downstream 17033 13165740 ~ 13175798 (+)
sfmbt2 sfmbt2,LOC107675978 coding downstream 41897 13190604 ~ 13227324 (+)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 coding downstream 89507 13238214 ~ 13254897 (+)
il15ra NA coding downstream 144281 13292988 ~ 13301954 (+)
LOC122342559 si:dkey-183c16.7,LOC107689220,LOC107755152 coding downstream 157037 13305744 ~ 13325959 (+)
G28209 gata3 non-coding upstream 1483 13031037 ~ 13144904 (+)
G28221 NA non-coding upstream 43487 13102322 ~ 13102900 (+)
LOC122342723 NA non-coding upstream 684160 12460686 ~ 12462227 (+)
LOC122343506 NA non-coding upstream 806286 12337945 ~ 12340101 (+)
G28104 NA non-coding upstream 991132 12148138 ~ 12155255 (+)
G28210 NA non-coding downstream 12588 13161295 ~ 13161843 (+)
G28233 NA non-coding downstream 28256 13176963 ~ 13177977 (+)
G28246 NA non-coding downstream 40789 13189496 ~ 13189767 (+)
G28254 NA non-coding downstream 79674 13228381 ~ 13228601 (+)
G28255 NA non-coding downstream 81455 13230162 ~ 13230554 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1331082 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1455258 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 1730160 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 1811931 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 2437440 10707132 ~ 10708947 (+)
kin kin,LOC102791470 other downstream 2029 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 156962 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 174581 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 257222 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 734187 13882894 ~ 13961098 (+)

Expression


Co-expression Network