G28248


Basic Information

Item Value
gene id G28248
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13247769 ~ 13373966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41879
ttttttttttttttttttttttttttttttttttttttttttttttttacACAGAcatcagttttaatttattgatgaTTATAAAGCTACAATTTACAGAATGCTCCAAACAGCAGAACTGGTCAGAGATGGTAAAGGGAACACAAACAAGATGAGGGATTATTTCTCTCCAGCTTTCGGTGGCACCCACTCGTGGATCTTCTTGTGAGTGGTTGAAAAGGGTACGTAGCAGTTAGCCGTGCCACTGTTGTTGAACTGATGAACTGTGGCCAGGAACTTCTTGGGCTCTGGAGGGTGAGTGGTGGGGGGATCATCCGTCATGCTGTGCAGCCAACGGTGCCTGAGAAAAACATCAAAGGGAGAACATTTGAACATTCAGAATTGC

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU41879 True 385 lncRNA 0.40 3 13247769 13373966

Neighbor

gene id symbol gene type direction distance location
sfmbt2 sfmbt2,LOC107675978 coding upstream 20445 13190604 ~ 13227324 (+)
itih5 itih5,LOC107675976,LOC107555826 coding upstream 71971 13165740 ~ 13175798 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding upstream 980013 12170127 ~ 12267756 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding upstream 1100483 12073703 ~ 12147286 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding upstream 1220301 12020621 ~ 12027468 (+)
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding downstream 49272 13423238 ~ 13432687 (+)
depdc4 si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010 coding downstream 66670 13440636 ~ 13446821 (+)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 72991 13446957 ~ 13458895 (+)
tnni1d tnni1d,LOC107597014,LOC108280151,LOC103374597 coding downstream 123774 13497740 ~ 13501524 (+)
LOC122342856 LOC107689257,LOC107726829 coding downstream 149984 13523950 ~ 13530743 (+)
G28256 NA non-coding upstream 15786 13231664 ~ 13231983 (+)
G28255 NA non-coding upstream 17215 13230162 ~ 13230554 (+)
G28254 NA non-coding upstream 19168 13228381 ~ 13228601 (+)
G28246 NA non-coding upstream 58002 13189496 ~ 13189767 (+)
G28233 NA non-coding upstream 69792 13176963 ~ 13177977 (+)
G28295 NA non-coding downstream 63970 13437936 ~ 13440022 (+)
G28298 NA non-coding downstream 93438 13467404 ~ 13470135 (+)
G28312 NA non-coding downstream 136890 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 142664 13516630 ~ 13520457 (+)
G28446 NA non-coding downstream 384001 13757967 ~ 13760112 (+)
kin kin,LOC102791470 other upstream 93411 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1432464 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1556640 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 1831542 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 1913313 11331545 ~ 11334456 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 31963 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 508928 13882894 ~ 13961098 (+)
trmu trmu other downstream 611551 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 803464 14177430 ~ 14294618 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other downstream 1026063 14400029 ~ 14482821 (+)

Expression


Co-expression Network