G28252 (si:dkey-183c16.7,LOC107689220,LOC107755152)


Basic Information

Item Value
gene id G28252
gene name si:dkey-183c16.7,LOC107689220,LOC107755152
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13305669 ~ 13315684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41888
ACGTCTTAGTTCCCTCCTTCAGGGTTATTCATTATTGCAAGTATTTCTATGACAATCTGACTAGATCATCTCTCTTCCGACTATTTTCCTTTCGGCTGGGTCTCAAACACGGCAGAGCACAACTTTAGTTCATACATTTCTGTCCCGGCGATATTTGGATCAGTTTAATATCTAAAACTCTTCCCAGAAGAAACACCTGGTCTAAACACCTGGACTGTATCATGTTGGCACCTGTCAGgaCTACAGGCACTGAGAGGGCGGCGTGTCCCATGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCTGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGAAAACATCAGGGAGAACGGAGTACGAGGAACTCTACTTCTTCCTCCAGgtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCG
>TU41889
CCGCAGTTGCGTTATGAAGTGGGTGAACACTAGAGGGAAATATAGGAAAACTGTACCAGGACTTAAAAACACATggattaaaatgacattatcaTGttattcATCATTACACGCATGTCTACGACAGTCTGATCACACTGGCAAGAGATAGGTAAAATTGCCAAgACATTGCTGTCCCGGCGCTGTTTGGATCAGTCTAACATCTGAAACCCTTCCCAGAAGAAACACCCGGTCTAAACCTATCGTACTGTATCATGCTGGCACCTGTCGGgaCTATGGGCACTGAGAGGGTGGCGTGTCCCTTGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCTGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGAAAACATCAGGGAGAACGGAGTACGAGGAACTCTACTTCTTCCTCCAGgtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCG
>TU41890
CCGCAGTTGCGTTATGAAGTGGGTGAACACTAGAGGGAAATATAGGAAAACTGTACCAGGACTTAAAAACACATggattaaaatgacattatcaTGGTATGTTATCGATCGTTATGCTCTTACTTGATAACGTACCGATTACTGCAATGATATCGCCTCGTTTTCTTAAAGCTACTGCCATGGCGGTGAAGCGTCTTGCAGTTTTTAGGATGTTTCTCCCCAACAAAATAACACGCTAAATTATGGGTTTTACACTGTACATTCAAACGGAAGACGTATACTCTAAAGTTATAATCGACCTTTGCTGTCgcaagcacacaaacaaacgTGTCAAAGGTAAGATTTCGTCATCAGCGTTAGCCCACGagctgcacttttttttccagttattcATCATTACACGCATGTCTACGACAGTCTGATCACACTGGCAAGAGATAGGTAAAATTGCCAAgACATTGCTGTCCCGGCGCTGTTTGGATCAGTCTAACATCTGAAACCCTTCCCAGAAGAAACACCCGGTCTAAACCTATCGTACTGTATCATGCTGGCACCTGTCGGgaCTATGGGCACTGAGAGGGTGGCGTGTCCCTTGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCCGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGCAAACATCAGGGAGAACGGAGTACGAGGAACTCTATTTCTTCCTccaggtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCG

Function

NR:

description
PREDICTED: bile acid-CoA:amino acid N-acyltransferase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41888 False 849 TUCP 0.49 6 13313868 13315684
TU41889 False 882 TUCP 0.49 7 13305669 13315684
TU41890 True 1172 TUCP 0.47 6 13305669 13315684

Neighbor

gene id symbol gene type direction distance location
il15ra NA coding upstream 3715 13292988 ~ 13301954 (+)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 coding upstream 50772 13238214 ~ 13254897 (+)
sfmbt2 sfmbt2,LOC107675978 coding upstream 78345 13190604 ~ 13227324 (+)
itih5 itih5,LOC107675976,LOC107555826 coding upstream 129871 13165740 ~ 13175798 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding upstream 1037913 12170127 ~ 12267756 (+)
lamb1b lamb1b,LOC107755155,LOC107689224 coding downstream 10681 13326365 ~ 13345061 (+)
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding downstream 107554 13423238 ~ 13432687 (+)
depdc4 si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010 coding downstream 124952 13440636 ~ 13446821 (+)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 131273 13446957 ~ 13458895 (+)
tnni1d tnni1d,LOC107597014,LOC108280151,LOC103374597 coding downstream 182056 13497740 ~ 13501524 (+)
G28256 NA non-coding upstream 73686 13231664 ~ 13231983 (+)
G28255 NA non-coding upstream 75115 13230162 ~ 13230554 (+)
G28254 NA non-coding upstream 77068 13228381 ~ 13228601 (+)
G28246 NA non-coding upstream 115902 13189496 ~ 13189767 (+)
G28233 NA non-coding upstream 127692 13176963 ~ 13177977 (+)
G28295 NA non-coding downstream 122252 13437936 ~ 13440022 (+)
G28298 NA non-coding downstream 151720 13467404 ~ 13470135 (+)
G28312 NA non-coding downstream 195172 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 200946 13516630 ~ 13520457 (+)
G28446 NA non-coding downstream 442283 13757967 ~ 13760112 (+)
kin kin,LOC102791470 other upstream 151311 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1490364 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1614540 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 1889442 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 1971213 11331545 ~ 11334456 (+)
G28249 LOC107689220,LOC107755152 other downstream 7604 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 90245 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 567210 13882894 ~ 13961098 (+)
trmu trmu other downstream 669833 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 861746 14177430 ~ 14294618 (+)

Expression


Co-expression Network