G28298


Basic Information

Item Value
gene id G28298
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13467404 ~ 13470135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41953
ggttTACCTTCTTCTTGAAGGTGTACCACCGATTGCTCCCTTCAAACTGCCACTTTGGAGTCGAAGGGCTCAAAAGGGTTCTTATTTGAGAGGTTATTCCAAGTAACCTGCTTAGTGAACACATGACACTCTTAGAAGTGCTGGTTATGTGTacttctatccatccatccacccattcaaataaatatatgtattcatatttaccCTCCATTTTGAGGTGGTTCATATTTAGGGCGGCGTCTAACCCGCCTCTTATTGCCCGTCGATAAATTTCTCTGACACATTTCTGGAAGAACAAACGCGTTGAAGATTGCGATCTTTCCCGTTTATAGAAACGCTATTTAAAAAGGAGACGGATGCGTGCGGGAGAAAGCAAAACAGACCTTTAAAGCTAATCTCGTACTGAGTAGAGTCGATGGCGATCTTGAATGAACCATGGCGGTCGTTTTGATACGCCGTCTCCAGCTGGGAGCTCTGAACTGCACTGGCCTGGCCTCCGTACCGACACCAGCAGTGGTCACCCCTGTAATACCACAGCCATTCTGTATCCCCCGCGCTCAGACGACGCACCTTAATATTGGTTTTCTGAAGAACTCTCATTTTAGTGAAATCGATCGATACAGCCCTGCGATGCAAACGAGAAAGAGCCAAATAAAAGCAGGCGGCAAGTTCGTTGGGTTGAATAATTCACCTTTAACAAAAGCGTTTCGCGCGTACCCAGCTTGGGTGTTGTAGAGCTTGATTCCTTTAGTGTTGGGGAGTGAATACTGGGCTTCCAGAATGTGATCGTTGCAAATGTTTTTCCAGCCCTTTTGAAAATTCATCTGCCATCTGTAGGGCCCCTCAAATATTTCATCTGTGTgtgattggaaaaaaaaaacgattaggTGGACTAATTTGTTCAACAATCAAACACAtgatgagtatatatatatatatatatataggccatgctctatatatgcattatacgtcatttttaattatacgtATCGACTACTAGAAAAACTACCAGACAATTTGAAATATGTCAtatactatacacacacactgtactaaATTAATgctgatgcattaaaaaaaactgctctttgaaataaaatgacacacattatattaaaatcccaatttaacaataaaaaacaggTTTCGGGATGAATCGCACGAAGCGCGTCCTAGAGCTAGCTAGGATCGCAAATACTTAATTTGTAGATGGGATTGAATTGTTTGGTGGAAACGGATGCGTTCACTTTTTATTGAGTTTAGTGCATGTGTAAGTCACGGGTGCTTTCGGGCTCCTGTTCACACATACCCTCAGATGAGGATCTGCCCCGTCCTGAACTCCGACTGTTGTGGTTCAGACGACATCCGGCACCGAACTTGCACGAACCCTTGAGGAAGTCCTTGCATATGTGCACGTTCTTACACTCATCTCCGTAACGACACTTGCCGCGGTTGTAATACGTACAGACGTTCTGCTTGAACACAAAGCGCAACCGAGTAAGATTATGTTCAtcggagaccagaacacctagatgcgcccccgtggacagatcaccggatcctgatgcacacacacacacacacactaagtcatttacgcTATCTGACACGGCAgggtttaaaattgaactggaggttaagtgctgggcgtccggccagaggagaactggtctggtttctcccaaggtttctTTTCcaccattctgtatggatggggtttgggttccttgccgctgtcgcctctggcttgcttaacTTCTAGCGACTACCGTCCAATTGATTACAGAAacagtctctgcatttaataacaaacttaTCAAtctcattatacatccctatcactgcattcttctgctttataccgTGCAAGCAAGCCGtgctgttaaaagcgctatataaataaaaatgatcgaCTACTGAGCTCCAGCTGCATTCACTTTGAATCAAAAGGTGTACCTCGATAGATATTCCTCCATCATCTTCGACGCCAGATCCAGAATCGTTTTCTGCCTCGGAGTCTGTGTCGCTAAACTCTAAGGAACTCTCATTAGATAGTTGGTAGCTGCCTTCGTCTGGGAAGAACGAAATATGAGGGCAATGGGAATTAGTTACACGGTCTGAAGAAAACGAAAACGTATGCAGCGTTGGCTAGGGCGGAGTAACTTCACTTATCGACTTTTAAAGGGGTTCGTATGCGACCCGGGCGCCGGTTAGCGTTGCGACAACATGCCCCCGACCCGTTAAAAACACTCTTCGAAGCAAGCATTCCCCGTGAAATATTCACATTAGTAAAACAAGCGGTCTTCAGAGTGCTGACATCGAGAAACAAAGGCTGACGCTTCAACCTAGAGAGCGCTGACCGAAACAAAGATCACCACGCCACTTCCCGAGCACGCGGTCTTTTCTTCTTAGGCTAAGTAGGCTTACAGACAACTCGCATGCTGTGTTTGAGCCAATTTTGCATTTGACGACAGGATATAGGCTATTAAACTCACCCGAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41953 True 2503 lncRNA 0.44 2 13467404 13470135

Neighbor

gene id symbol gene type direction distance location
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 8509 13446957 ~ 13458895 (+)
depdc4 si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010 coding upstream 20583 13440636 ~ 13446821 (+)
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding upstream 34717 13423238 ~ 13432687 (+)
lamb1b lamb1b,LOC107755155,LOC107689224 coding upstream 122343 13326365 ~ 13345061 (+)
LOC122342559 si:dkey-183c16.7,LOC107689220,LOC107755152 coding upstream 141445 13305744 ~ 13325959 (+)
tnni1d tnni1d,LOC107597014,LOC108280151,LOC103374597 coding downstream 27605 13497740 ~ 13501524 (+)
LOC122342856 LOC107689257,LOC107726829 coding downstream 53815 13523950 ~ 13530743 (+)
iqsec3a iqsec3,iqsec3a,LOC107689235,LOC107748472,LOC107689713,LOC107584743 coding downstream 64989 13535124 ~ 13632058 (+)
LOC122343497 parp11,LOC107726831,LOC107689238,LOC107597042,LOC107748476,LOC107584716,LOC108280019 coding downstream 195524 13665659 ~ 13669633 (+)
LOC122343498 LOC107726847,LOC107689239,LOC107597006 coding downstream 199638 13669773 ~ 13673709 (+)
G28295 NA non-coding upstream 27382 13437936 ~ 13440022 (+)
G28248 NA non-coding upstream 93438 13247769 ~ 13373966 (+)
G28267 NA non-coding upstream 146288 13312934 ~ 13321116 (+)
G28256 NA non-coding upstream 235421 13231664 ~ 13231983 (+)
G28255 NA non-coding upstream 236850 13230162 ~ 13230554 (+)
G28312 NA non-coding downstream 40721 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 46495 13516630 ~ 13520457 (+)
G28446 NA non-coding downstream 287832 13757967 ~ 13760112 (+)
G28486 NA non-coding downstream 357890 13828025 ~ 13828537 (+)
G28503 NA non-coding downstream 521888 13992023 ~ 13992831 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 33798 13405929 ~ 13433606 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other upstream 151720 13305669 ~ 13315684 (+)
kin kin,LOC102791470 other upstream 313046 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1652099 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1776275 11689314 ~ 11691129 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 412759 13882894 ~ 13961098 (+)
trmu trmu other downstream 515382 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 707295 14177430 ~ 14294618 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other downstream 929894 14400029 ~ 14482821 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 1687620 15157755 ~ 15214432 (+)

Expression


Co-expression Network