LOC122342546


Basic Information

Item Value
gene id LOC122342546
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12988707 ~ 13071520 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU41980
CGTTCTTCAAACCATCCGTTCATCATGTGGTCCTGAGCTGTTTgtgaaatattcataaaaagctcGACAAACGCTGGGCACTATTTGCTTTCATTAAATGGAAAAGGGCAGAAGGAACATTGCTCTGAATTTCTCCTGTTGTGTTTTATGGACCGAAGTCACACGGGTGTGAAACAacaagCCATAATTACTCTAATGGAGCAGGACGGAGCCAGG
>XR_006250593.1
cagcaaaaaacaacaaaggacCCATCATAAACcatcaaaaaaacagcatagaCCAGcatcaaaacatacctaaccaacatatgctgtttttttcaagtGATATCAAATGCATTTGTAGCATTTGTACAATTTTCTTACATATAGGCCTGCAATGCACTTCACATTTCAAATCCAGTCTCTAACTGGGACCAACAATGGACCAACTAAGGCCTTTGTCCAATCAAATGTTCTTTAGACTGAGAAGATCCCGCCCACTAACACCACCTGCCACTCATTAGCAATAGCAAGTAGCAAGTAATGTTTTGGTGACTGTTATGTTTCACCAGTGCTTCTAGTTTGGAAAATACATCAGTATAGAAAAGAAAACCGTTCTTCAAACCATCCGTTCATCATGTGGTCCTGAGCTGTTTgtgaaatattcataaaaagctcGACAAACGCTGGGCACTATTTGCTTTCATTAAATGGAAAAGGGCAGAAGGAACATTGCTCTGAATTTCTCCTGTTGTGTTTTATGGACCGAAGTCACACGGGTGTGAAACAacaagatgaatctaATCGGAGTTCGATTAAAAACGATCCCGGCTCTTCATTGCAATCGGCGAGGGATTCTGTTGAACAAAAGATGACGTCAGATAAAGCAAGCGCATCCATAATAGGATGTTTCTCGCATGGTTCTGCTTCCTCTAGTAGtgaatccatgcatt
>XR_006250594.1
cagcaaaaaacaacaaaggacCCATCATAAACcatcaaaaaaacagcatagaCCAGcatcaaaacatacctaaccaacatatgctgtttttttcaagtGATATCAAATGCATTTGTAGCATTTGTACAATTTTCTTACATATAGGCCTGCAATGCACTTCACATTTCAAATCCAGTCTCTAACTGGGACCAACAATGGACCAACTAAGGCCTTTGTCCAATCAAATGTTCTTTAGACTGAGAAGATCCCGCCCACTAACACCACCTGCCACTCATTAGCAATAGCAAGTAGCAAGTAATGTTTTGGTGACTGTTATGTTTCACCAGTGCTTCTAGTTTGGAAAATACATCAGTATAGAAAAGAAAACCGTTCTTCAAACCATCCGTTCATCATGTGGTCCTGAGCTGTTTgtgaaatattcataaaaagctcGACAAACGCTGGGCACTATTTGCTTTCATTAAATGGAAAAGGGCAGAAGGAACATTGCTCTGAATTTCTCCTGTTGTGTTTTATGGACCGAAGTCACACGGGTGTGAAACAacaagGCTGTAATTTGCCCTCACCTGGCCCCTGCTCTGCTCTCTGTCCCCAGCCATAATTACTCTAATGGAGCAGGACGGAGCCAGGGGTCAGAGCTCCGGCCCCGGGCCCCCACCAGACAACGGGCCCTTCAGCCAGCCTGAGACAGGAGTGGACATACCTAATGGTCATGCTGACAGTCCTGTCTGTGAATGCAGTTacctgtgtgtgtctctgccaTTGTGGTCTGCGACTAAGGGATTATGTGCATGTTGTC

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41980 False 216 lncRNA 0.44 3 12988876 13071153
XR_006250593.1 False 707 lncRNA 0.40 3 13022123 13071520
XR_006250594.1 True 799 lncRNA 0.45 3 12988707 13071520

Neighbor

gene id symbol gene type direction distance location
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding downstream 317236 12539057 ~ 12671471 (-)
usp6nl usp6nl,LOC107669711,LOC107710686,LOC107572286 coding downstream 452381 12492354 ~ 12536326 (-)
LOC122343505 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 coding downstream 557821 12413786 ~ 12430886 (-)
LOC122343504 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776 coding downstream 617537 12279641 ~ 12371170 (-)
nup107 nup107,LOC107590859,LOC107710680,LOC107694200,LOC107680040 coding downstream 1148655 11830757 ~ 11840052 (-)
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding upstream 3696 13075216 ~ 13090835 (-)
taf3 taf3,LOC107555823,LOC107675973,LOC107578374 coding upstream 30795 13102315 ~ 13144908 (-)
atp5f1c atp5c1,LOC107728502,LOC107748457,LOC107555824 coding upstream 75134 13146654 ~ 13150706 (-)
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding upstream 80901 13152421 ~ 13164123 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding upstream 196555 13268075 ~ 13275474 (-)
G28130 NA non-coding downstream 719967 12265665 ~ 12268740 (-)
LOC122342788 NA non-coding downstream 750570 12236645 ~ 12238137 (-)
G28117 NA non-coding downstream 833456 12148132 ~ 12155251 (-)
G28086 NA non-coding downstream 969706 12018609 ~ 12019001 (-)
G28090 NA non-coding downstream 991404 11997013 ~ 11997303 (-)
G28349 NA non-coding upstream 156180 13227700 ~ 13227947 (-)
G28350 NA non-coding upstream 157574 13229094 ~ 13229319 (-)
G28353 NA non-coding upstream 170986 13242506 ~ 13245388 (-)
G28359 NA non-coding upstream 179131 13250651 ~ 13252034 (-)
G28377 NA non-coding upstream 240353 13311873 ~ 13319748 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 499526 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 972940 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 992068 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 1304845 11653470 ~ 11683862 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other downstream 1414941 11414720 ~ 11573766 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other upstream 105441 13176961 ~ 13186890 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 245412 13316932 ~ 13361938 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 340104 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 620951 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 744054 13815574 ~ 13831851 (-)

Expression


Co-expression Network