G28359


Basic Information

Item Value
gene id G28359
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13250651 ~ 13252034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42039
TAGAATGTAGAAACTGCAGCCCACAAACGATCTCGGCCGCGTAGAACCTATCGACAGAGGGAACGGAAGAGGTGTAAGAGAGAGAAACCCTGAGAAAAGAGGAGCaggcttttaaaatgtgtttgtgggGGCTGCGTATGAGTCTCACGTGGACCGTGGGAGGTCAAATCTGTGGCAGGCCTGGATGTGGAACATTAAGTCGCCCCCATTTAAGTACTCCATCACGAAGAAAAGATTTTCCTTTAGAGACCTTGGTCTGGAAGGTGCAGTAGAGATGCGTGAGGAAGGGGTGTTCCCAGGCCAGAGACAGCACTCTCCTCTCCACCATAGTGCATTCAACATCATCATCCATTAGTACTACATCTTTCTTCAGGGCCTTCACTGCAAAGAACTGCCCCGTGCCTTTCAGCTCAGCCAGGAA
>TU42040
TAGAATGTAGAAACTGCAGCCCACAAACGATCTCGGCCGCGTAGAACCTATCGACAGAGGGAACGGAAGAGGTGTAAGAGAGAGAAACCCTGAGAAAAGAGGAGCaggcttttaaaatgtgtttgtgggGGCTGCGTATGAGTCTCACGTGGACCGTGGGAGGTCAAATCTGTGGCAGGCCTGGATGTGGAACATTAAGTCGCCCCCATTTAAGTACTCCATCACGAAGAAAAGATTCCTTGGTCTGGAAGGTGCAGTAGAGATGCGTGAGGAAGGGGTGTTCCCAGGCCAGAGACAGCACTCTCCTCTCCACCATAGTGCATTCAACATCATCATCCATTAGTACTACATCTTTCTTCAGGGCCTTCACTGCAAAGAACTGCCCCGTGCCTTTCAGCTCAGCCAGGAA

Function

GO:

id name namespace
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42039 True 421 lncRNA 0.50 2 13250651 13252034
TU42040 False 409 lncRNA 0.51 2 13250651 13252034

Neighbor

gene id symbol gene type direction distance location
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding downstream 86528 13152421 ~ 13164123 (-)
atp5f1c atp5c1,LOC107728502,LOC107748457,LOC107555824 coding downstream 99945 13146654 ~ 13150706 (-)
taf3 taf3,LOC107555823,LOC107675973,LOC107578374 coding downstream 105743 13102315 ~ 13144908 (-)
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding downstream 159816 13075216 ~ 13090835 (-)
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding downstream 579180 12539057 ~ 12671471 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding upstream 16041 13268075 ~ 13275474 (-)
rbm17 rbm17,LOC107755150,LOC107748463,LOC107663450 coding upstream 29149 13281183 ~ 13301329 (-)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding upstream 121597 13373631 ~ 13375343 (-)
nr2c1 nr2c1,LOC107689225,LOC107755159 coding upstream 124140 13376174 ~ 13384446 (-)
fgd6 fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032 coding upstream 132554 13384588 ~ 13403216 (-)
G28353 NA non-coding downstream 5263 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 21332 13229094 ~ 13229319 (-)
G28349 NA non-coding downstream 22704 13227700 ~ 13227947 (-)
LOC122342546 NA non-coding downstream 179131 12988707 ~ 13071520 (-)
G28130 NA non-coding downstream 981911 12265665 ~ 12268740 (-)
G28377 NA non-coding upstream 59839 13311873 ~ 13319748 (-)
LOC122342564 NA non-coding upstream 91692 13343726 ~ 13344257 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding upstream 358182 13610216 ~ 13612771 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 568662 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 614743 13866777 ~ 13867298 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 63761 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 761470 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1234884 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 1254012 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 1566789 11653470 ~ 11683862 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 64898 13316932 ~ 13361938 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 159590 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 440437 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 563540 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 723323 13975357 ~ 13980559 (-)

Expression


Co-expression Network