G28434 (iqsec3,LOC107689235,LOC106609634,LOC107689713)


Basic Information

Item Value
gene id G28434
gene name iqsec3,LOC107689235,LOC106609634,LOC107689713
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13610216 ~ 13612771 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42147
AAGAGCCATGCGCAATATATTTGGATGCAGCATGACATGAATATTAGCGAAAAACAAAAAGGGTCGTACTCACCGATTTCATTCCCACAATGCTTTGCTCCACCTTGGTGACGTAAGTGACGTGGTCTTCATTCGATCGTAATTCCCTCAGCTGAATGCGCTCATATATTCCCACTACCATATCTCGTGGAATATCTGCACCATCATCAACccctaaataaaaacacacACCTCTCAGGTTGCGGATGAAGTCTTCTAGCATCATTTTACGGTCGGGTTTGATGTTGGGACTGTACATGTCCGTGTTGAGGAGGATGATGGCAAATGCGAGGATGAAGATTGTGTCAGGATTGTGGAACTGCTGCACCACGTCTGGGTTACACATACAGTAACGCTGGCTGAGGAAAACGGGATAcgggaaagagaaaaaacaactgTTTATGTAACACGTTTTCATAAATagatttctatatttattttttccttttcattaaaAACGTTGTCGGTTCTCATCAATGTTCTCTTTGTATTATAAGTTTCACTTTATAAATATGTACTTATATTGGCTTTTTCTCTTTTACTTTAGATCAGTTTAAAAGCTGAAACAGTGCCTGGCGAGCGAACAAGCTTGTCTATTAGCTATGTTTTTCCAAACGGCCTGCTTCAGCATGATGCAGATACAGACCTGTACCTGCAACTATGGCATCCACGAGCATTCTGCAAACATGACACAGACCAAGGACACATGTAACATAACCACAAGCCAAGCTACGCACTGGAATTGCTAAGTAATGGTAGATAATTGGAAATATAGGACTGCCAACTACTATGAGACACTTAGGCTCTCCAAATGGAGGAACTGGTGGCAGTTTGAGACAAAGTGGATCTTATATCTTTCACAACAGATTTTAGACTTTGTTTCCTAAACATGTCTCCTTCCTGACCCAGTGGTACCGGCTGGAGAAGCTGTAAAAGGATTCACTCCCCATCCTCTGATTTCCAGTGTGTTGTAATGGCTTTTCTGAACTGTCCTTGGCGGACTTCATATTTGGTCCTGTGCCCCGAGGGTCCGTGGTCTCCTACCAGTGCCCTCCTCTCATGACCAAAAACAAGATAAATCATGCAGATGCTCCTTTGTTCCC

Function

symbol description
iqsec3 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including actin cytoskeleton organization; activation of GTPase activity; and regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 3 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42147 True 1142 lncRNA 0.43 2 13610216 13612771

Neighbor

gene id symbol gene type direction distance location
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding downstream 96812 13502936 ~ 13513404 (-)
st8sia1 st8sia1,LOC107748471,LOC107755164,LOC107567669 coding downstream 115789 13484786 ~ 13494427 (-)
si:ch211-244b2.4 NA coding downstream 139867 13466028 ~ 13470349 (-)
si:ch211-244b2.3 NA coding downstream 144543 13461043 ~ 13465673 (-)
usp44 usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228 coding downstream 170113 13433309 ~ 13440103 (-)
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding upstream 22842 13635613 ~ 13648049 (-)
LOC122343493 LOC107726837,LOC107748473,LOC107689714,LOC107584715 coding upstream 39754 13652525 ~ 13665137 (-)
pyroxd1 pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716 coding upstream 61500 13674271 ~ 13679088 (-)
LOC122343316 NA coding upstream 70454 13683225 ~ 13687640 (-)
LOC122343398 LOC107726825,LOC107584742,LOC107689735 coding upstream 89612 13702383 ~ 13708079 (-)
LOC122342564 NA non-coding downstream 265959 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 290468 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 358182 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 364828 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 380897 13229094 ~ 13229319 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 207925 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 254006 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 256651 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 267260 13880031 ~ 13880847 (-)
G28569 NA non-coding upstream 268534 13881305 ~ 13882012 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 177513 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 248278 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 423326 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 1121035 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1594449 12014631 ~ 12015767 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 79700 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 202803 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 362586 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 542721 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 1075102 14687873 ~ 14704622 (-)

Expression


Co-expression Network