G28446


Basic Information

Item Value
gene id G28446
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13757967 ~ 13760112 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42167
ATTTGGAAGAAATGTGGTGACGCGGTTATGAAGGATCCCATGGCCATGATTAAACATCCAGCTCCAATGAGTCGTGGTCTGTGAAGCTTAGCACCAAAGTAACTGACAAGTGCTATTACAAGCAGATTACctgaaatgaacaaaagtcGTTATGTCTTGTCGCGAGTGTGGTAGTTACGTTTGCGATTGCTATTAGTAAAACACAAATTGCTGCATTTAGATCAATTTGACAAATATAAAGTTATGCCATGAAACTCGAGATGGCGAAGATCTCACTCAATATGACATGACACTGGTTCTCTCTTGTATCGGAAGCTGATCAGCTTACTACAGCGTTTAAATAGCAAGCTAATGTTTGCTGTAGCAGCAGCAACACGCTttagaaaccctccaccttccccagatCCACCTGTATAAACCTGCTACAAGGTGCTTCATGTATGCTATGGAAGAGGAACTTTTTTACATCATGATTAAGAATTTCACCAAAGAAATCGAAGTCACCAAAGAAGACGCTATTTCTTAAAACCATCCATGTGATGCATGTTTACATATACTTTTTCAAGAcaatgcaaaatacattttgaataaattcataCAACGTAATTCAGTGGGAAAAGtatgggtttttttctgttcttgttgCTTTATTCTCACCGATTTCAAAACTTCCATCAATGAATCCAATCAGCGAGCTGGGAATGTCAAAACGCCTCTCAATCTGTGTGATAGAGCTCTTCATGTAGCTGCCCTGAAATGCTTTggcaaagtaaacaaaacacatggcagccaaaaacatctgaaagttagagacagaaaaagagagagacaacaaaTCCCTGAAATACGACTAATCAGATCGTGTGCTACAATTGCATCCCATACGTTTTCgtattaatgttttgtacaCTTTTATCTGTTTCGTAATTCAAGCCTGTCCTTGCACAAATGACAGAGTACGAAACATTAAGATAAATATGTTCTGTTGTCAATAGGGGCACAACTGTAGAATACGTTCTGATGGTATTTCAGGGATTTGGACAAACAACCTACAAAGACGTGTTGGTTAGAAGCCAAGTTGCACAATGCGTTATACAATGCTACGTGATCATGTGATCATGGGATCAAATGCTCATAAAATGTTTATGCGCTATAAATCACGATGACGCCCTCTAGAGGGTGTTCAACTTTAAAACATGGACGACTGGCTCTTTAAGATGGTTTTAAGTAGTGCCCACTAAAACAAGTCAAGCTGAGACCATCTCATGATATTTTGAGCTATTTTGTTGAATGAAACTGTCAGGGTTCTGTCATCTTGGTCTAGTTTATTAGTGGTTTTGTTTATTAGACCTGACACTCCCCTCTTGTCtagttttctttctctctcatgtTTTGTTCAGGCTCAGTTCTGGTTTTACATTGGGATCCAGACACCCGTGCACTCCTCCGTTTGTTCGGCACGTGGTTGGCGGTTAACCGCATGCTTCTCTTCATTTTTGGGCTGCGTGCTTtcttgtttgtaatgttttgtgcGAACAATTGGCTTTTGAGTGTTCTCATTATCTGTGcgttcatttcctgttttgcaCATGGCTAGTGATTGTTTTTGATAGCCGTGTGCTTGCTCAGTACCCTCCCCATTTGCTTCCTATTTATTCTCCTTGGCTGCGTTCCACTCCACTTTAAGACACGCACTCGCAAACTTGCCTAAGCTCTTCCCGAGATGGAGATCTTCCCaaaattgctattttatttggtttaatatttaacatgcaataaaatttGTCCGTGACTTAAATGTCTAAGGTATTTTTGAGGCCATTACGCAAACAAAATCTCAGGAGGCGCTCTGAAACTATGCGGCTAAAGTCAATAGAAAGTAATTGAAAAGTAGCGGGATTAAATGAGCCGTTATCACGTTCATGTCTTTGATCATAATGGGCCACCGTAAACAAGAAACTGAAACGCAAAAGATGTAGAATTCCAAATTACCTTCAATTTGGAGCAGCATGGCTCTCGCGTCGTTTTCTTTCCCTCTTTCATGACGCCCTGGAAACAATACGAATGTCAGATGacagtacagtatatttttCCAGGGCCCACTGTTTACAGAACAGAAAATAT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU42167 True 2124 lncRNA 0.40 2 13757967 13760112

Neighbor

gene id symbol gene type direction distance location
LOC122343498 LOC107726847,LOC107689239,LOC107597006 coding upstream 84258 13669773 ~ 13673709 (+)
LOC122343497 parp11,LOC107726831,LOC107689238,LOC107597042,LOC107748476,LOC107584716,LOC108280019 coding upstream 88334 13665659 ~ 13669633 (+)
iqsec3a iqsec3,iqsec3a,LOC107689235,LOC107748472,LOC107689713,LOC107584743 coding upstream 125909 13535124 ~ 13632058 (+)
LOC122342856 LOC107689257,LOC107726829 coding upstream 227224 13523950 ~ 13530743 (+)
tnni1d tnni1d,LOC107597014,LOC108280151,LOC103374597 coding upstream 256443 13497740 ~ 13501524 (+)
LOC122343279 LOC107689243,LOC107689721,LOC107716183,LOC106575984,LOC108427068 coding downstream 29532 13789644 ~ 13827064 (+)
LOC122343278 LOC107689245,LOC107689723,LOC107566844,LOC105891163,LOC106575983,LOC106609116 coding downstream 72020 13832132 ~ 13842547 (+)
LOC122343277 kif21a,LOC107689724,LOC108427070 coding downstream 87180 13847292 ~ 13878723 (+)
tprkb tprkb,LOC107726833,LOC107666212,LOC107721157,LOC107569227,LOC107600017,LOC107689748 coding downstream 220664 13980776 ~ 13982174 (+)
celsr1a celsr1a,LOC107569230,LOC107710744,LOC107666207,LOC107689740 coding downstream 234018 13994130 ~ 14065681 (+)
LOC122343375 NA non-coding upstream 237510 13516630 ~ 13520457 (+)
G28312 NA non-coding upstream 244374 13510856 ~ 13513593 (+)
G28298 NA non-coding upstream 287832 13467404 ~ 13470135 (+)
G28295 NA non-coding upstream 317945 13437936 ~ 13440022 (+)
G28248 NA non-coding upstream 384001 13247769 ~ 13373966 (+)
G28486 NA non-coding downstream 67913 13828025 ~ 13828537 (+)
G28503 NA non-coding downstream 231911 13992023 ~ 13992831 (+)
G28667 NA non-coding downstream 1048485 14808597 ~ 14809661 (+)
G28726 NA non-coding downstream 1074518 14834630 ~ 14854751 (+)
LOC122342648 NA non-coding downstream 1102921 14863033 ~ 14864100 (+)
G28249 LOC107689220,LOC107755152 other upstream 227336 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 324361 13405929 ~ 13433606 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other upstream 442283 13305669 ~ 13315684 (+)
kin kin,LOC102791470 other upstream 603609 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1942662 11796982 ~ 11815305 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 122782 13882894 ~ 13961098 (+)
trmu trmu other downstream 225405 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 417318 14177430 ~ 14294618 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other downstream 639917 14400029 ~ 14482821 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 1397643 15157755 ~ 15214432 (+)

Expression


Co-expression Network