LOC122342647


Basic Information

Item Value
gene id LOC122342647
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14811440 ~ 14825838 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42554
ataaaataaataaaattattttaaaataaagtaaatcagAGCCTGAGAAAATATCTGCATTATTATCTGCGCAATTTCTgtgactgggaaaaaaaaaagcacttctcGTTGCTCCAAGAGAGGAAAATAATCACATTAATGGATTTAAGGATCATCATTagtatttgttttgatttgtgccgatttaaaaaaaaaaaaagactaaacaaAAACGAGTCCTTTTTGGACGGGATTTTAATTACTGTGATTAATGTGCGTGATCACTAAGAGTaatgagaaatataaaaatgctcaaaagcaaaacaaacggGTGCATTATGATAATGAGAATTGTGCTTGGTTTTCATAAAAATcgtctcaaaataataataataataacataaatggGCGGAAAAGATTGTTTAATACTAATACTTTTGTTATTGTCTTATACTTTCGGTATTGTTTGGTCAAGAAAAATAGgcctgttttgtttatttttttaaatcctataaaaataaaacagtatttttcttTCGATTTTTGGGTTAAAACGTGAGTCGTGTTACATGTTTGGCCGAGACTCCTTGTAATACCATCAAGAATTGATATTATTTTCCACTAGGAGGAGCCCCACTCTCTTGTTTGGAAGGGGTTCTGGATCCAATCAGCATCCGTCGGCTGCAGACGCACTCAAAGCGTTCCTGCCAGGCAACTCGACGGAGGTCTCGAAAAGCTTCTACACGTCAGATGCCTTCACCGTGAATATATCTGTACAATACAACTGAGAGTTGAACTTACTGAAGCAATCTAAACTTTCTCAGATACTTTGTCACCAAATGCTGCCGTGCTTGTCTCAGGACTACACTGAAAGCTGCTTTGATTGTGGACTGTCCATTTGAATCAACGCCACTGATGCATGGAAGTGTCTCTAATAGAAATAACTTCGTTTTTTTTCGATTGAGAAAGTTGGAGAATGTTTATGATGCTTGTAAAACCTCGCTGAGGACATCTATTTCAAATGCTTTGAAAGATCATGTTGCACTCACGTGAAACATGATTACTTCTGTCGATGAAGAAGATCCAATGGATGAAGGCTATGAAGGATGACggccttttatttttgattaaagacTTAATAGCTGTTGATTCAAACTGAAGGCAAATAAAACCAATGAAGTTTGTCGTGTCTGTTTTGCTTTCACGGTACCAAATGTTACAATGTTTTGAAGATGTTCCCTACATGTTTTGGACACTATTGaggattttatttcaatttgtttcaattttaaaaattccTTATCCGAAACCTCTTTATTTGCAGTTTCTCTGCTCGTATGTTTTATCCGTTTTGGAAGAAACCTTTCAGACTGTATATAGGCTTATTTGCTGTTTTCTCTTTGGTTTTCGacattttatatctatataaaaaatctaatgaaaAACCAAGACTGtacaaagtttgtttttaataaagtgtttttggtCATAaaaaaaaaaaaaaa
>XR_006250623.1
taaaataaataaaattattttaaaataaagtaaatcagAGCCTGAGAAAATATCTGCATTATTATCTGCGCAATTTCTgtgactgggaaaaaaaaaagcacttctcGTTGCTCCAAGAGAGGAAAATAATCACATTAATGGATTTAAGGATCATCATTagtatttgttttgatttgtgccgatttaaaaaaaaaaaaagactaaacaaAAACGAGTCCTTTTTGGACGGGATTTTAATTACTGTGATTAATGTGCGTGATCACTAAGAGTaatgagaaatataaaaatgctcaaaagcaaaacaaacggGTGCATTATGATAATGAGAATTGTGCTTGGTTTTCATAAAAATcgtctcaaaataataataataataacataaatggGCGGAAAAGATTGTTTAATACTAATACTTTTGTTATTGTCTTATACTTTCGGTATTGTTTGGTCAAGAAAAATAGgcctgttttgtttatttttttaaatcctataaaaataaaacagtatttttcttTCGATTTTTGGGTTAAAACGTGAGTCGTGTTACATGTTTGGCCGAGACTCCTTGTAATACCATCAAGAATTGATATTATTTTCCACTAGGAGGAGCCCCACTCTCTTGTTTGGAAGGGGTTCTGGATCCAATCAGCATCCGTCGGCTGCAGACGCACTCAAAGCGTTCCTGCCAGGCAACTCGACGGAGGTCTCGAAAAGCTTCTACACGTCAGATGCCTTCACCGTGAATATATCTGTACAATACAACTGAGAGTTGAACTTACTGAAGCAATCTAAACTTTCTCAGATACTTTGTCACCAAATGCTGCCGTGCTTGTCTCAGGACTACACTGAAAGCTGCTTTGATTGTGGACTGTCCATTTGAATCAACGCCACTGATGCATGGAAGTGTCTCTAATAGAAATAACTTCGTTTTTTTTCGATTGAGAAAGTTGGAGAATGTTTATGATGCTTGTAAAACCTCGCTGAGGACATCTATTTCAAATGCTTTGAAAGATCATGTTGCACTCACGTGAAACATGATTACTTCTGTCGATGAAGAAGATCCAATGGATGAAGGCTATGAAGGATGACggccttttatttttgattaaagacTTAATAGCTGTTGATTCAAACTGAAGGCAAATAAAACCAATGAAGTTTGTCGTGTCTGTTTTGCTTTCACGGTACCAAATGTTACAATGTTTTGAAGATGTTCCCTACATGTTTTGGACACTATTGaggattttatttcaatttgtttcaattttaaaaattccTTATCCGAAACCTCTTTATTTGCAGTTTCTCTGCTCGTATGTTTTATCCGTTTTGGAAGAAACCTTTCAGACTGTATATAGGCTTATTTGCTGTTTTCTCTTTGGTTTTCGacattttatatctatataaaaaatctaatgaaaAACCAAGACTGtacaaagtttgtttttaataaagtgtttttggtCATA

Function

GO:

id name namespace
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42554 True 1484 lncRNA 0.34 3 14811440 14825838
XR_006250623.1 False 1469 lncRNA 0.34 2 14823773 14825837

Neighbor

gene id symbol gene type direction distance location
LOC122342640 cerk,LOC107689729,LOC107552286,LOC107710741,LOC107600034 coding downstream 86233 14704793 ~ 14725207 (-)
srr si:ch73-263o4.4,LOC107569226,LOC108427077,LOC107666211 coding downstream 825994 13982356 ~ 13985446 (-)
alg10 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 coding downstream 830825 13975805 ~ 13980615 (-)
LOC122342633 NA coding downstream 835810 13970264 ~ 13975630 (-)
LOC122343235 LOC107689737,LOC107716193,LOC107689255,LOC107584741,LOC107716201 coding downstream 1026732 13763390 ~ 13784708 (-)
LOC122342646 prkcq,LOC107748461,LOC107555829,LOC107675981 coding upstream 429 14826267 ~ 14847177 (-)
brd1a brd1,LOC107744592,LOC107563621 coding upstream 298207 15124045 ~ 15136539 (-)
alg12 alg12 coding upstream 317950 15143788 ~ 15148210 (-)
LOC122342488 LOC107744205,LOC107601002,LOC107699198,LOC107687568,LOC107562147,LOC107741716 coding upstream 729413 15555251 ~ 15588908 (-)
large1 large,LOC107600999,LOC107719870,LOC107687564,LOC107699203,LOC107758207,LOC108425352,LOC103363517 coding upstream 787280 15613118 ~ 15632452 (-)
G28597 NA non-coding downstream 736914 13994018 ~ 14074526 (-)
LOC122342415 NA non-coding downstream 741035 14068087 ~ 14070405 (-)
G28594 NA non-coding downstream 818638 13992051 ~ 13992802 (-)
G28577 NA non-coding downstream 830276 13980790 ~ 13981164 (-)
G28570 NA non-coding downstream 929033 13882191 ~ 13882407 (-)
G28738 NA non-coding upstream 177311 15003149 ~ 15003429 (-)
LOC122342397 NA non-coding upstream 191947 15017785 ~ 15023863 (-)
G28789 NA non-coding upstream 383846 15209684 ~ 15213451 (-)
G28850 NA non-coding upstream 591018 15416856 ~ 15418238 (-)
LOC122342747 NA non-coding upstream 617926 15443764 ~ 15445229 (-)
LOC122342642 pfkfb3 other downstream 729 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 106818 14687873 ~ 14704622 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other downstream 634698 14155492 ~ 14176742 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other downstream 830881 13975357 ~ 13980559 (-)
LOC122343280 NA other downstream 979589 13815574 ~ 13831851 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other upstream 198749 15024587 ~ 15027663 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other upstream 775602 15601440 ~ 15611575 (-)
G28898 NA other upstream 1106656 15932494 ~ 15932864 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other upstream 1881936 16707774 ~ 16708960 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 2060315 16886153 ~ 16900295 (-)

Expression


Co-expression Network