LOC122342869


Basic Information

Item Value
gene id LOC122342869
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15413147 ~ 15420303 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42692
CGGACACTCCAGTACCAGCCCAGTTCTGTGGTGAGGTAAAAGGTTGACGTTGagttgtgatttatatatatttttccttttttatatatatctatttgaATCTGAAAGTACTGCTGTTAATTGTCACCACAAGTAAGTTTATCATTGTgcattctttattgttttttggtatcttcaaaacactgaaaataaatgtaacattttcgtTATCTTGGAGTAGGGGCATTCCTCCTGTCTTGTGGGCTGATAGAGGGAAAGAAAGGTTAGTATTTCTATAGTTAGAGAGCCATCGTGTACATTAAACTTCAATCCTCATCAGTCTTGGTCACAAAAGACATCTAACAAGGCAGGTAAAAGCATACTTATAAATTTAAGTACAGGAATTAAATGTACTAGTAGTTAAAGACCTAGATCTTGAAGCTCTAGTCGTCCAAGATACAGTTAACATCTTTGTACCCC
>XM_043237013.1
CGGACACTCCAGTACCAGCCCAGTTCTGTGGTGAGGTAAAAGGTTGACGTTGagttgtgatttatatatatttttccttttttatatatatctatttgaATCTGAAAGTACTGCTGTTAATTGTCACCACAATAGGGGCATTCCTCCTGTCTTGTGGGCTGATAGAGGGAAAGAAAGGTTAGTATTTCTATAGTTAGAGAGCCATCGTGTACATTAAACTTCAATCCTCATCAGTCTTGGTCACAAAAGACATCTAACAAGGCAGGTAAAAGCATACTTATAAATTTAAGTACAGGAATTAAATGTACTAGTAGTTAAAGACCTAGATCTTGAAGCTCTAGTCGTCCAAGATACAGTTAACATCTTTGTACCCCCTACACTGTAGTGAAATTTCCCGCTACATAAAATTGGCGTCACGAACAGGATCGTTCTTAGCCTGATCTCtgtattattgtgttattagTATTCTGTCCCAGGTCTGTGAGCAAGAAGAAAATGGCAGAACTGGAGGAGTTGAAGAGGGAGTTTGCTGAGATGCAAAGGAGGTTAGCGGAGCAAGCTGGAGCTTTGGATCATGCCAGATCGGAACAGCGAGAAGCTTTGTCATTGGCAAAAGCTGTAATAGAGCAGCAAGCCTCCACTCGTGCTACCCCAGCAACAATTTACGTTCCAAGAGAGCACAAACTCGCTGACTTCACTGGTTCCACCAAGCCTGGAGACGGAGGAGTAGAGGAGTGGATTCTTTCCATGAAATCAGCGTTCCGTGTGATGAAAGTACCAGAGGAAGATCAGGTGGAGCTGATTAAACCGCATTTAAAAGGAGAAGCTAGAGATACCGTGAGGTTCATGCTGACGGAGGGGGATAACAGTGTGGAGTCTATCTTCAAACTGTTACAAGAAACCTATGGAGACAAGGTTCCTATCGGCACAAGATTAAAGGACTTTTATGATCGGAAGCAAGCACCTGCTGAAACTATACGTGCTTACGCTTATGACTTACGAGAAAGACTTTACAAGGTGAAGCGCAGAGAGCCTGGTCGCGTTCCAGATGAAGAGGGTGTTCTGAAGGAGCAGTTGGTCCTGGGATTAAGGGATGATTTATTAAGGAGAGAAATGAAGCGAAGGATCAAGGAAGAGCAAAGTCTGACTTTTGCACAGTTGATGCAGGACGCAATCACCTggtctgaggaggaggaggcacagccagaaagtattttaaaaccCCCAGTGCGTGCAAAGGCTGCAGTTCACACTACTGTGGCGACTGGCGACACTTCATCTCCGCTGACATTGGAGAAATTGCCGACGCAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42692 False 459 lncRNA 0.35 2 15413147 15420303
XM_043237013.1 True 1314 mRNA 0.44 2 15413147 15414545

Neighbor

gene id symbol gene type direction distance location
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding upstream 57592 15342262 ~ 15355555 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding upstream 255513 15149133 ~ 15157634 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding upstream 269736 15136921 ~ 15143411 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding upstream 605781 14784476 ~ 14807366 (+)
LOC122342644 tbc1d22a,LOC107721154,LOC107689730 coding upstream 651175 14758492 ~ 14761972 (+)
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding downstream 175358 15595661 ~ 15602006 (+)
LOC122342219 LOC107554691,LOC107656224 coding downstream 218209 15638512 ~ 15644874 (+)
LOC122342595 NA coding downstream 954273 16374576 ~ 16377941 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding downstream 958330 16378633 ~ 16398499 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding downstream 978329 16398632 ~ 16427186 (+)
G28797 NA non-coding upstream 38610 15374110 ~ 15374537 (+)
LOC122343380 LOC107699369,LOC107730684,LOC107601011 non-coding upstream 71643 15339618 ~ 15341504 (+)
G28745 NA non-coding upstream 298619 15114111 ~ 15114528 (+)
LOC122342648 NA non-coding upstream 549047 14863033 ~ 14864100 (+)
G28726 NA non-coding upstream 558396 14834630 ~ 14854751 (+)
G28813 NA non-coding downstream 67773 15488076 ~ 15492182 (+)
G28882 NA non-coding downstream 304889 15725192 ~ 15725554 (+)
G28888 NA non-coding downstream 317165 15737468 ~ 15737762 (+)
G28889 NA non-coding downstream 334510 15754813 ~ 15755128 (+)
G28890 NA non-coding downstream 419899 15840202 ~ 15840666 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other upstream 198715 15157755 ~ 15214432 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 930326 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 1118529 14177430 ~ 14294618 (+)
trmu trmu other upstream 1421375 13985517 ~ 13991772 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other upstream 1452049 13882894 ~ 13961098 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other downstream 19031 15439334 ~ 15555682 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other downstream 145196 15565499 ~ 15655278 (+)
G28891 NA other downstream 421069 15841372 ~ 15841855 (+)
G28899 NA other downstream 564916 15985219 ~ 15985726 (+)
G28982 NA other downstream 1053595 16473898 ~ 16474381 (+)

Expression


Co-expression Network