G28806 (LOC107744205,LOC107601002,LOC107687568,LOC107699198)


Basic Information

Item Value
gene id G28806
gene name LOC107744205,LOC107601002,LOC107687568,LOC107699198
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15439334 ~ 15555682 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42701
CCAATACGCACACACATCGAACCCCAgtaaaaAAAAAAACGTAAAGCATAAAAAGAAACGTTTCTAACTATGTAGAAtacttatttcatatatttgcaACAGCATCGTAATCTAGTCGTAAATACATTAAGGCcgagaaaaataatgcattaaaaaacagtgaataaaaaaaaaaaaattgtgagcACTGTGTGTTggctttaaaaaatacttatgaATTGAGTGACGCTCGTAATTTCGTTCGaacttttcaatattttatggTAAGACGTTACCAGAAGAAAATGCACGTTGGTTGGATGTTACCGTCCGTGTGTCTTCACGAAGAGAGCTGTTCTGCGCGTCTCTGTGTGGGTTCGGGGTCAGTTGTTGCCTTGCGGCTGGAGCGTGGTTTTGTGCAGTACTGCGGAGGAGCCAGCTGTGGGCGCTGTGGCGCTGGTGCTGCTGCCCGCGGCTTTGATCCACGGCAGCGAGAGCAGCGATGCTCCGGTGGTGGTGGTGGCGGTCATAGTCACTTGGATCATCTGGTCACGCTGGATGAGCCGGATCAGAGTCTTGAGACGCTCAAGGGACGTCTGAGTCTCCCGCTGCTGACCTAAAAGACGCTC

Function

NR:

description
PREDICTED: PHD finger protein 21B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42701 True 608 TUCP 0.46 3 15439334 15555682

Neighbor

gene id symbol gene type direction distance location
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding upstream 83779 15342262 ~ 15355555 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding upstream 281700 15149133 ~ 15157634 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding upstream 295923 15136921 ~ 15143411 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding upstream 631968 14784476 ~ 14807366 (+)
LOC122342644 tbc1d22a,LOC107721154,LOC107689730 coding upstream 677362 14758492 ~ 14761972 (+)
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding downstream 39979 15595661 ~ 15602006 (+)
LOC122342219 LOC107554691,LOC107656224 coding downstream 82830 15638512 ~ 15644874 (+)
LOC122342595 NA coding downstream 818894 16374576 ~ 16377941 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding downstream 822951 16378633 ~ 16398499 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding downstream 842950 16398632 ~ 16427186 (+)
G28797 NA non-coding upstream 64797 15374110 ~ 15374537 (+)
LOC122343380 LOC107699369,LOC107730684,LOC107601011 non-coding upstream 97830 15339618 ~ 15341504 (+)
G28745 NA non-coding upstream 324806 15114111 ~ 15114528 (+)
LOC122342648 NA non-coding upstream 575234 14863033 ~ 14864100 (+)
G28726 NA non-coding upstream 584583 14834630 ~ 14854751 (+)
G28882 NA non-coding downstream 169510 15725192 ~ 15725554 (+)
G28888 NA non-coding downstream 181786 15737468 ~ 15737762 (+)
G28889 NA non-coding downstream 199131 15754813 ~ 15755128 (+)
G28890 NA non-coding downstream 284520 15840202 ~ 15840666 (+)
G28896 NA non-coding downstream 372449 15928131 ~ 15928838 (+)
LOC122342869 NA other upstream 19031 15413147 ~ 15420303 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other upstream 224902 15157755 ~ 15214432 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 956513 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 1144716 14177430 ~ 14294618 (+)
trmu trmu other upstream 1447562 13985517 ~ 13991772 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other downstream 9817 15565499 ~ 15655278 (+)
G28891 NA other downstream 285690 15841372 ~ 15841855 (+)
G28899 NA other downstream 429537 15985219 ~ 15985726 (+)
G28982 NA other downstream 918216 16473898 ~ 16474381 (+)
atp5mj NA other downstream 1482737 17038419 ~ 17040830 (+)

Expression


Co-expression Network