G28890


Basic Information

Item Value
gene id G28890
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15840202 ~ 15840666 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42852
tgTTGGAGTTATGTATgtatccatcgggtgccaggctttgtcagcctggtgagaacggaatgttggagttaaatgttgacagttatgcacctgtggctcttttagtttcagtttgattcttggtcataacatggcctccgtataatactgatagggccaccggaagaatccgaaggagtgaagattctgacgcacaagaaatgtggccaattgttttcatttattgtatcttgtcttttcctctataaataaagtgacttgcgatctgagtttcggaggaggcaatggaggcaaaagggaggttaaggagaaacctgcttctctcccgcttgcaaccgacagcgcaatccttgcaagcttaaaaatccaaaaacttgtcttgtgttttatttcgccttgagttgatccttcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42852 True 414 lncRNA 0.43 2 15840202 15840666

Neighbor

gene id symbol gene type direction distance location
LOC122342219 LOC107554691,LOC107656224 coding upstream 195328 15638512 ~ 15644874 (+)
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding upstream 238196 15595661 ~ 15602006 (+)
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding upstream 484647 15342262 ~ 15355555 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding upstream 682568 15149133 ~ 15157634 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding upstream 696791 15136921 ~ 15143411 (+)
LOC122342595 NA coding downstream 533910 16374576 ~ 16377941 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding downstream 537967 16378633 ~ 16398499 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding downstream 557966 16398632 ~ 16427186 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding downstream 595725 16436391 ~ 16457297 (+)
LOC122342226 NA coding downstream 774679 16615345 ~ 16617218 (+)
G28889 NA non-coding upstream 85074 15754813 ~ 15755128 (+)
G28888 NA non-coding upstream 102440 15737468 ~ 15737762 (+)
G28882 NA non-coding upstream 114648 15725192 ~ 15725554 (+)
G28813 NA non-coding upstream 348020 15488076 ~ 15492182 (+)
G28797 NA non-coding upstream 465665 15374110 ~ 15374537 (+)
G28896 NA non-coding downstream 87465 15928131 ~ 15928838 (+)
G28901 NA non-coding downstream 216809 16057475 ~ 16057700 (+)
G28911 NA non-coding downstream 571351 16412017 ~ 16419965 (+)
G28912 NA non-coding downstream 571860 16412526 ~ 16420148 (+)
LOC122342600 NA non-coding downstream 616811 16457477 ~ 16461526 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 184924 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 284520 15439334 ~ 15555682 (+)
LOC122342869 NA other upstream 419899 15413147 ~ 15420303 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other upstream 625770 15157755 ~ 15214432 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 1357381 14400029 ~ 14482821 (+)
G28891 NA other downstream 706 15841372 ~ 15841855 (+)
G28899 NA other downstream 144553 15985219 ~ 15985726 (+)
G28982 NA other downstream 633232 16473898 ~ 16474381 (+)
atp5mj NA other downstream 1197753 17038419 ~ 17040830 (+)
G29526 NA other downstream 2459749 18300415 ~ 18301189 (+)

Expression


Co-expression Network