G28911


Basic Information

Item Value
gene id G28911
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16412017 ~ 16419965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42882
ATTTTCTCCAAACCACgtatctccctccctctttaGGTTATAGGAAAACAGacaatgtaatgaataaataaatcaaatcaacgtaacaaacagcaacaacagtgggcccacaaaatcacacacacacacacacacacacacctccccgTTGCAGGCCTGTGTCGTGGCTAGTGTGCGTTGAGGCCTTGAAACTGAAACTGGCCGCTTCACTCGAATGAGCAaacgaaaaaacaaacacacagtaccCTTTCTTCCCGTTCCCGGATCGCGATCTCAATATTCCACCGGAGCGTCGATCGTCCCACGATGCCGGAGGAACACCCAACGTTTCCGGTAGCTGGGTGCGCTATCcggaggaataaaagaaaaaaagtcctgCGATCTTGAAATCCAACGAAGAAACGTCTATCCACGGTACACGACGACAGCGATCGTGTGAACGTTTTGACACACGAACACTATAGTACAGCTGATGGTCGCAGCGGCGATGTCCGTAAACGTTCTTGAGAAAACGCTGATAAACTCGACGTTAATATTAACTGTATGTTAATAATcaatacaaaaggaaaaaaa
>TU42885
ATTTTCTCCAAACCACgtatctccctccctctttaGGTTATAGGAAAACAGacaatgtaatgaataaataaatcaaatcaacgtaacaaacagcaacaacagtgggcccacaaaatcacacacacacacacacacctccccgTTGCAGGCCTGTGTCGTGGCTAGTGTGCGTTGAGGCCTTGAAACTGAAACTGGCCGCTTCACTCGAATGAGCAaacgaaaaaacaaacacacagtaccCTTTCTTCCCGTTCCCGGATCGCGATCTCAATATTCCACCGGAGCGTCGATCGTCCCACGATGCCGGAGGAACACCCAACGTTTCCGGTAGCTGGGTGCGCTATCcggaggaataaaagaaaaaaagtcctgCGATCTTGAAATCCAACGAAGAAACGTCTATCCACGGTACACGACGACAGCGATCGTGTGAACGTTTTGACACACGAACACTATAGTACAGCTGATGGTCGCAGCGGCGATGTCCGTAAACGTTCTTGAGAAAACGCTGATAAACTCGACGTTAATATTAACTGTATGTTAATAATcaatacaaaaggaaaaaaa

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42882 True 573 lncRNA 0.46 2 16412017 16419965
TU42885 False 567 lncRNA 0.46 2 16412017 16419965

Neighbor

gene id symbol gene type direction distance location
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding upstream 13518 16378633 ~ 16398499 (+)
LOC122342595 NA coding upstream 34076 16374576 ~ 16377941 (+)
LOC122342219 LOC107554691,LOC107656224 coding upstream 767143 15638512 ~ 15644874 (+)
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding upstream 810011 15595661 ~ 15602006 (+)
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding upstream 1056462 15342262 ~ 15355555 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding downstream 16426 16436391 ~ 16457297 (+)
LOC122342226 NA coding downstream 195380 16615345 ~ 16617218 (+)
chrna2b chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998 coding downstream 281078 16701043 ~ 16710156 (+)
rhoj rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930 coding downstream 402148 16822113 ~ 16838424 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding downstream 505052 16925017 ~ 16932206 (+)
G28901 NA non-coding upstream 354317 16057475 ~ 16057700 (+)
G28896 NA non-coding upstream 483179 15928131 ~ 15928838 (+)
G28890 NA non-coding upstream 571351 15840202 ~ 15840666 (+)
G28889 NA non-coding upstream 656889 15754813 ~ 15755128 (+)
G28888 NA non-coding upstream 674255 15737468 ~ 15737762 (+)
LOC122342600 NA non-coding downstream 37512 16457477 ~ 16461526 (+)
G28969 NA non-coding downstream 44480 16464445 ~ 16464690 (+)
G28985 NA non-coding downstream 54778 16474743 ~ 16475333 (+)
G28991 NA non-coding downstream 99446 16519411 ~ 16540160 (+)
G29011 NA non-coding downstream 189759 16609724 ~ 16610004 (+)
G28899 NA other upstream 426291 15985219 ~ 15985726 (+)
G28891 NA other upstream 570162 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 756739 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 856335 15439334 ~ 15555682 (+)
LOC122342869 NA other upstream 991714 15413147 ~ 15420303 (+)
G28982 NA other downstream 53933 16473898 ~ 16474381 (+)
atp5mj NA other downstream 618454 17038419 ~ 17040830 (+)
G29526 NA other downstream 1880450 18300415 ~ 18301189 (+)
G29545 NA other downstream 2016495 18436460 ~ 18461317 (+)
G29642 NA other downstream 2463214 18883179 ~ 18886402 (+)

Expression


Co-expression Network