G28982


Basic Information

Item Value
gene id G28982
gene name NA
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16473898 ~ 16474381 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU42966
TGGACTTTCTGCTTACTGCAACGGCCAGTGGACAAATGAAAGACTGGGTGAGTGAACATAGAGATACACTTGAAGTAGTTTATACTAGAGTAAGGGCTAGGCTAGGTAGGGCTGCACAGCTCCGTAAGGAGCGCCATGAACGGGTAGGAAAGGAACTTGCCTTGCAAGAAGGGCAAGAAGTGTATTTGCGTGATTATGGCATTCGTGGCCgtcataaaatacaaaatcattgGTCCAGCACTGTTTACAAAGTAGTTAGAACTCCAAGAGGTGATGGTGGCGTATACATTATAGAGCAGGCTGACAATCCTTCTTGTGTAAAACGGGTGCATGGGTCCCATTTAAAGATGGTACCATACAGCGAATTCTCTGGCCAGATGGTTGATCCAGGGTTAGGGGTACTGGATGATGACATGAACGAGCAGCTAGCTTCCCCAAGGGCCATGGATGTGGATGACCTGGAGATAGCCCTGGTGGGGGATTC

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005811 lipid droplet cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42966 True 484 TUCP 0.48 1 16473898 16474381

Neighbor

gene id symbol gene type direction distance location
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding upstream 16601 16436391 ~ 16457297 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding upstream 46712 16398632 ~ 16427186 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding upstream 75399 16378633 ~ 16398499 (+)
LOC122342595 NA coding upstream 95957 16374576 ~ 16377941 (+)
LOC122342219 LOC107554691,LOC107656224 coding upstream 829024 15638512 ~ 15644874 (+)
LOC122342226 NA coding downstream 140964 16615345 ~ 16617218 (+)
chrna2b chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998 coding downstream 226662 16701043 ~ 16710156 (+)
rhoj rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930 coding downstream 347732 16822113 ~ 16838424 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding downstream 450636 16925017 ~ 16932206 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding downstream 463418 16937799 ~ 16939687 (+)
G28969 NA non-coding upstream 9208 16464445 ~ 16464690 (+)
LOC122342600 NA non-coding upstream 12372 16457477 ~ 16461526 (+)
G28912 NA non-coding upstream 53750 16412526 ~ 16420148 (+)
G28911 NA non-coding upstream 53933 16412017 ~ 16419965 (+)
G28901 NA non-coding upstream 416198 16057475 ~ 16057700 (+)
G28985 NA non-coding downstream 362 16474743 ~ 16475333 (+)
G28991 NA non-coding downstream 45030 16519411 ~ 16540160 (+)
G29011 NA non-coding downstream 135343 16609724 ~ 16610004 (+)
LOC122343214 LOC107589090,LOC107723504,LOC107697312,LOC107563691,LOC107746370,LOC107701470 non-coding downstream 224140 16698521 ~ 16700218 (+)
G29026 NA non-coding downstream 274337 16748718 ~ 16752589 (+)
G28899 NA other upstream 488172 15985219 ~ 15985726 (+)
G28891 NA other upstream 632043 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 818620 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 918216 15439334 ~ 15555682 (+)
LOC122342869 NA other upstream 1053595 15413147 ~ 15420303 (+)
atp5mj NA other downstream 564038 17038419 ~ 17040830 (+)
G29526 NA other downstream 1826034 18300415 ~ 18301189 (+)
G29545 NA other downstream 1962079 18436460 ~ 18461317 (+)
G29642 NA other downstream 2408798 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2815839 19290220 ~ 19342911 (+)

Expression


Co-expression Network