G29022 (chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496)


Basic Information

Item Value
gene id G29022
gene name chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16707774 ~ 16708960 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43020
CTAAAGTCAGCATCTTCTGCTCTCAGGTGGTCTGCTATGTAGTGAACCCCCTCCAGAGCTTGCAGGACACTGGGGGACAGGGGGAATCCCGGGTTGTCTGGCATCATGTTGTCAGGCCGCTTTGTGACATTAACTCTTCCACCAAGCTGCCTGGAAGCCAGGCCCAACTCCAGTCTAGAGGAAGGGCCGAATTTCTGCAGAGTAGGCGGAGTCGTGGCTAGAGGGCAGGGCGAAGGGGTCTGGAGTGAAAGCGAGATCGCAGAGGACAGCGTTCCCAGTTCTAAGTCCTTATAACAGAAGCGTCTGCGGGACTCTTCCTCCCCTCTGAACCAGCTGGTAGATGTACTGAGGGTCGCGTTTGCCGGTCCAAGCACCCGTGACGTCATTCCTTGGCCCTGCCGCTGCAGGAGGAGGAGTTTCTGCCTGCGACGGCTGTCCGGTGCAGGTCTCCGCATAAACAACCACCGCGGGATCAAATCCAAGAAGACTGAGTGAACCCAACGGGGCATCTTATGAGTGCTGGGCGAGCGGTGGTGGACGTTAAGCACGAAGACGGTGATGACGATGGACAGGGTGACAAAGATCATAGTGAAGAGGAGGTATTCGCCAATGAGCGGGATCACGAGCGAGGTGGAGGGGATTATTTCAGTGATGAGCAGCAGGAAGACGGTGAGCGAGAGGAGGACCGAGATGCACAGCGTGATCTTCTCACCGCAATCTGACGGGAGGTAGAAGACCAGCACGGTCAGGCAGGAGATGAGCAGGCAGGGGATGATGAGGTTTATGGTGTAGAAGAGCGGCAGACGGCGGATGATGAAGAAGTAGGTGATGTCTGGGTAGATCTCGTGGCAGCAGTCGTACTTCTTGGTGTTGTAGGTGCCCACGGCATTGATGATGGCCCACTCGCCGCTCTCCCAGTAGTCTTTTAAGTCCACCGTGTTCTCGATGCGCTCCAGGTCGATCTTGGCTTTGTCGTAAGTCCACGAGCCGAATTTCATCTTGCAGTTCTGCTGGTCAAAGGGGAAGAAGGTGACATCGATGCTGCATGAGCTCTTGTAGATGGCAGGTGGTACCCAGCGCACTTTACCTGTGTGGAAGAGGTGGGCTTTGGTCATGTGGGTCACCGCAAACTCTCCGTCTGCACTGAAGGAGACAACAACATTTGATCAGATGCCATTTTGTTAAGA

Function

symbol description
chrna2b Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in interpeduncular nucleus medulla oblongata; interpeduncular nucleus tegmentum; neurons; and spinal cord. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy 4. Orthologous to human CHRNA2 (cholinergic receptor nicotinic alpha 2 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43020 True 1187 TUCP 0.55 1 16707774 16708960

Neighbor

gene id symbol gene type direction distance location
LOC122342599 LOC107749047 coding downstream 114680 16573127 ~ 16593094 (-)
LOC122342596 NA coding downstream 164872 16537980 ~ 16542902 (-)
LOC122342885 LOC107749047,LOC107728228,LOC107671223 coding downstream 208935 16484567 ~ 16498839 (-)
LOC122342598 NA coding downstream 224598 16477791 ~ 16483176 (-)
LOC122343883 NA coding downstream 687212 16020444 ~ 16020562 (-)
LOC122343211 ptk2bb,LOC107589060,LOC107697310,LOC107701495,LOC107563684,LOC107707077 coding upstream 1564 16710524 ~ 16724794 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding upstream 39756 16748716 ~ 16821470 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding upstream 131745 16840705 ~ 16851156 (-)
sgpp1a si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688 coding upstream 144039 16852999 ~ 16864423 (-)
snapc1a LOC107743976,LOC107697295,LOC107589064 coding upstream 155545 16864505 ~ 16867985 (-)
G29021 NA non-coding downstream 6103 16701068 ~ 16701671 (-)
G29012 NA non-coding downstream 97775 16609636 ~ 16609999 (-)
LOC122342602 NA non-coding downstream 156770 16550333 ~ 16551004 (-)
LOC122342601 NA non-coding downstream 162153 16544954 ~ 16545621 (-)
G28970 NA non-coding downstream 243095 16464445 ~ 16464679 (-)
LOC122342882 NA non-coding upstream 199249 16908209 ~ 16924965 (-)
G29127 NA non-coding upstream 246495 16955455 ~ 17026339 (-)
G29143 NA non-coding upstream 329867 17038827 ~ 17040834 (-)
G29179 NA non-coding upstream 510191 17219151 ~ 17219453 (-)
G29212 NA non-coding upstream 640329 17349289 ~ 17349506 (-)
G28898 NA other downstream 774910 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 1096199 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1680111 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 1897063 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 2003152 14687873 ~ 14704622 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 177193 16886153 ~ 16900295 (-)
G29135 NA other upstream 297967 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 409383 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 928063 17637023 ~ 17638742 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 1025646 17734606 ~ 17744543 (-)

Expression


Co-expression Network