CI01000004_07960123_07960701


Basic Information

Item Value
gene id CI01000004_07960123_07960701
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7958746 ~ 7961208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_07960123_07960701.mRNA
ACATTGAGTCAGAAAGACTTGAAAACTGTTGTGAATAATCTTAAATAAAATTTCAGCTTGACAAAACAGTTTTGAATAATGAAAAAAAAGAAAACTAAATGATCAAATCAGTATGTTACTGACAGTAGTAGATGTCATTGATGGAAATTAGCCAGTGGCAAAATGGAAATTACAGTACAGCATGGATCATGCTTGCTTGGCACTTGTACTGTCATTGGCTATGTCCCTGTGAAGAGCAGAGCACTGATCAATCACCGAAAACAAAAGAACACAAAAGCCCTTACTGATGGAGCAACGTTTGGCAATGACAAAGATATCTATAAAGTGCTACCTATTATATCAGAAGCAAGCTTTAAAACCGTGACATACAACATATTAATGCTTATAGGCTCATGCTTTGGATGAAGCAGAATAGAAAAATAAA
>TU33565
CTTCGTTTATTGGCATTGGGAACAGGAAAACAATCACAGCAACATTAGTAACAGCGTTGTAGTGGTAAACAGTACTGTTGGGATTGTCAGAACTGCGACAGAAAGAGACCAAACACAGGTGTGCCATGTACAGTCAAGTCGAAACCTTTCATGGCCACTCAGCCTTTCTTTCACCACACAAAACATTGCTGTAAAGAGCACAGACTGACATTAAGATCAACATATAGCCAATAATTAAAAGCCCCGTTTACTGTAATCCATTTACATACAAAGATTCACTGTATCCAATATTAAAATTCATACCATGGTATAAAAAGGACACAAACAATCTTACTTACAATGAGCACATTGAGTCAGAAAGACTTGAAAACTGTTGTGAATAATCTTAAATAAACGTTAATAATGACTCCAGCCCTTACTGATGGAGCAACGTTTGGCAATGACAAAGATATCTATAAAGTGCTACCTATTATATCAGAAGCAAGCTTTAAAACCGTGACATACAACATATTAATGCTTATAGGCTCATGCTTTGGATGAAGCAGAATAGAAAAATAAATGAGAAGCATATGTAAACCATGTAAATGCCATAAATTAAAGCAGCATTTCTACAAATACAGTTGAGAAGGGTTTTAAGTTAAAAATTATAATAGTCAAATGAGTATCATCTGTGCAAAGGAACAACAATACAAAGCCACGGTGTACGGCTGGAGTGGTAAATCCTATAAATGTGGCTCCAGTTCCACTATTAAGCACTAGGTGGCGTCACATACAAACACAAAAGATCACAATCATGGCTCGACTTCAGTCTACAGATTTTATAGCGATCCAAGGAAGACGGCGGTCACTATGTGGGTACCCTCAAGCTGTTTGCTACATGAAAGCAATCGTTTCTTTGAATCCTGAGATGTTCTGTTGTAAGGTTAGGTTTTTTTTTGTTCAGCTAATACCTAATAGACCAGCTTTAAGTCAACAGTGTATCTTTTAAAAAAACATTTTAGTGCACATACGTCTCACATAAAAAGTGTCCTGTTTATCAATCAATATGTTCGGACGGCTCTCAAAGGTCCACTTGTTTGTTAACTTTAAACCTGGGATGTCACCGGAAGACATTTGAGTACATTTCCTCTCAGTCTGTATCACAGGCAGTTTTACGCTTAGACTGCATGAAACGGCACCCCGAAATCATGAAACTGAGAATGTTTTAAGAAAGCTTCATGGTTTGACAGTCCGTTGAGTAGGAGCTCTGTCCAGTGCAAGGTGACTACTGTATAAAAAAACGTCCCGTGGAAGCTTTCCTGCCTCTCCTTTGCTCTCCAGCACTGTGTCGCCTCTGCCCGAGGAAGCTAAGAATGGGTTGGAGAGGGATAGGTAGGTGGTAAAGAAGAGGTATGAAAGAAAACAAAAACGAAATGAAAAAGTGCACTAGTGTTATGTTCCCAGACGCAGACACGACACGTTTTTCCCTTCTTGGTCAAGTTCTCTATCTTCATCTTCACTGTCTGGGGGCTCGCCCATCGTAAAAGACATTGTCCTGCAGCCAGGGGAGCGGGTGGTCAGGTTGGCGTGCTGTGTGCGGGGAACCAAAGATGGATGTTTGCCTTCTGGATCTGTCCTGGAGGAATCTTGTGCGATGGTAGTGAACTCTTCATCCACCGGACTTTCAACATCAGACTCTCCTTCTTCTTCCAAGGTCAGTTCGAATTGGAATTTCTCCCCCGCTGAGGTGATGCCTCCACCCATCGCTCCCATCCCAACCACAACGCCCTTGTCCTCAGGGGTAGAAGTGGGACTGTGAGGGATCATGCTCTGGTACCACTCACGATTGTCCTCCAGTGTGTCGAGAATCTCCTGGGCATCAGGGTGAACCAGATCCGCCCAGGTCTCCCACAGTGGGTGCACGATGTAGTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_07960123_07960701.mRNA False 424 mRNA 0.35 2 7960104 7960863
TU33565 True 1917 lncRNA 0.43 2 7958746 7961208

Neighbor

gene id symbol gene type direction distance location
CI01000004_07829094_07830772 NA coding downstream 129291 7829003 ~ 7830813 (-)
CI01000004_07805884_07817962 CRTC1 coding downstream 141168 7805653 ~ 7818936 (-)
CI01000004_07792267_07797908 CRSP7 coding downstream 161642 7791898 ~ 7798462 (-)
CI01000004_07784930_07788318 CNN2 coding downstream 171597 7783684 ~ 7788507 (-)
CI01000004_07755406_07758041 NA coding downstream 202063 7755167 ~ 7758041 (-)
CI01000004_07998445_08008810 HLTF coding upstream 37370 7997249 ~ 8008810 (-)
CI01000004_08010634_08013275 NCK1A coding upstream 48996 8009859 ~ 8013275 (-)
CI01000004_08030758_08033803 SLC35G2, SLC35G2A, SLC35G2B coding upstream 69648 8030511 ~ 8033803 (-)
CI01000004_08049634_08054074 NA coding upstream 88274 8049137 ~ 8054511 (-)
CI01000004_08103263_08106420 PCCB, PCCB.L coding upstream 142400 8103263 ~ 8106420 (-)
G29562 NA non-coding downstream 56007 7899358 ~ 7904097 (-)
G29610 NA non-coding downstream 123286 7834816 ~ 7836818 (-)
G29608 NA non-coding downstream 138041 7821842 ~ 7822063 (-)
G29552 NA non-coding downstream 155876 7800957 ~ 7804228 (-)
G29556 NA non-coding downstream 159352 7800447 ~ 7800752 (-)
G29663 NA non-coding upstream 63088 8023951 ~ 8025200 (-)
G29750 NA non-coding upstream 376306 8337169 ~ 8339546 (-)
G29829 NA non-coding upstream 398040 8358903 ~ 8359102 (-)
G29388 NA other downstream 1328197 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 1414532 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 2332590 5616644 ~ 5628289 (-)
G27746 NA other downstream 2756380 5178227 ~ 5203724 (-)
G26788 NA other downstream 4684383 3267683 ~ 3275721 (-)
G29656 NA other upstream 3501 7964364 ~ 7965500 (-)
G29746 NA other upstream 393635 8354498 ~ 8358127 (-)
G30316 NA other upstream 1417074 9377937 ~ 9406921 (-)
G31203 NA other upstream 2785574 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 3446602 11406957 ~ 11412907 (-)

Expression


Co-expression Network