G29200


Basic Information

Item Value
gene id G29200
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17385289 ~ 17385680 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43253
cgctggtgtcctcgtgggtccaggaagggtggtGAACAGACTCGCCAGGCCGCCAGATAAGCGCGCTGTCGGACATTgtagtccaggcgatgactgcacacgtgtaccgcggacgggccaggatgccgggctgtttatcccttctgACTGCCGACCGGAAGAAGCGGAGGAGAAGCCgcgggaagaagccgccgcccctcgcgccccggaccagagaggggagcgcgtgcggccgccggactccgccccttacctggacccttccccctggagcactacctgacctgcacttcccctgcagcacgacgaggacaccagttcccccgtttatttggacactttttcccctggacactttattttgtatatttctgttaataaaaagcctctcc

Function

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0044440 obsolete endosomal part cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0010008 endosome membrane cellular_component
GO:0031982 vesicle cellular_component
GO:0043227 membrane-bounded organelle cellular_component

KEGG:

id description
ko03040 Spliceosome
ko04144 Endocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU43253 True 392 lncRNA 0.61 1 17385289 17385680

Neighbor

gene id symbol gene type direction distance location
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding upstream 36419 17308293 ~ 17348870 (+)
nudt14 nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 coding upstream 91653 17266457 ~ 17293636 (+)
brf1b brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373 coding upstream 208792 17122433 ~ 17176497 (+)
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding upstream 302169 17040857 ~ 17083120 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding upstream 348132 17033921 ~ 17037157 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding downstream 11455 17397135 ~ 17410852 (+)
LOC122342653 l3hypdh,LOC107684001 coding downstream 97753 17483433 ~ 17490295 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding downstream 179773 17565453 ~ 17578804 (+)
clocka clock,clocka,LOC107701480 coding downstream 196390 17582070 ~ 17630822 (+)
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding downstream 258755 17644435 ~ 17665897 (+)
G29192 NA non-coding upstream 90649 17294375 ~ 17294640 (+)
G29181 NA non-coding upstream 164673 17220257 ~ 17220616 (+)
G29178 NA non-coding upstream 165775 17219142 ~ 17219514 (+)
LOC122342667 NA non-coding upstream 266183 17090539 ~ 17119106 (+)
G29089 NA non-coding upstream 299432 17046871 ~ 17085857 (+)
G29272 NA non-coding downstream 168153 17553833 ~ 17554190 (+)
LOC122342426 NA non-coding downstream 281470 17667150 ~ 17669761 (+)
LOC122343158 NA non-coding downstream 324375 17710055 ~ 17711711 (+)
G29305 NA non-coding downstream 352387 17738067 ~ 17739667 (+)
G29306 NA non-coding downstream 359848 17745528 ~ 17746317 (+)
atp5mj NA other upstream 344459 17038419 ~ 17040830 (+)
G28982 NA other upstream 910908 16473898 ~ 16474381 (+)
G28899 NA other upstream 1399563 15985219 ~ 15985726 (+)
G28891 NA other upstream 1543434 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1730011 15565499 ~ 15655278 (+)
G29526 NA other downstream 914735 18300415 ~ 18301189 (+)
G29545 NA other downstream 1050780 18436460 ~ 18461317 (+)
G29642 NA other downstream 1497499 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1904540 19290220 ~ 19342911 (+)
G29835 NA other downstream 2345582 19731262 ~ 19786128 (+)

Expression


Co-expression Network