G29318 (LOC107745315,LOC107597934)


Basic Information

Item Value
gene id G29318
gene name LOC107745315,LOC107597934
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17916054 ~ 17922889 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43427
acacacacacacacacacagacacacacacagacacacacagacacacacacacacacacacacacagacacacacacaaacacacaaagacacacacacacacacacacacacacacacacacactgtcagcAGCACAGTACACCTCATAGATATTTCTCTAAACTCAAATGAAGTTGTTAAAAAGTTATATTCGGTaatcttgaaaaaaatgtaaatatcaaatACCTTTACTAAATCAAAATTGTATAAAGTACTTTACTGATTAAATATGCAGCCTTTATagtaattcttaaaaatttaaaaaacattctttgCAAATGTATGAATTTGGCTTCACATTGTGAACAcatgtattattgttttcttttattggaTTAGATTAGATCAGATTAGAAGTTATATCTGATTATTTATGATGAAATTAAGTTGTAAAAgccaaaaaatgtcatttggtTTATGTGTAAAGTATCTAATGATTAAATATGTAGCGTTTAGTAAACCtttaataaacatcaaaatattcaCTGATTAAATATCTAGCCTctagtaacaataataaaagttacaatatttactttttatgacTGCATtggatgaaaacatttttgattattattaaattattaaatccaagtggtatataaaatatgtcattttaaatatataatttaaatataatttgacagAAAAATGCTGGACTTGGCTTCACATTGTTAAccaattattatcattatcattattattattattattattattattattgttgttgttgttgttgttcttgtaGTTTGGCCCAAAGTGTAATACTTTTCATTCCCACAGAGCTTCATATTAAACATGCAGAGATAGATCTGTGTgtgaaaacaattaaacaacattGAAGTGTTTATTTGATGGCTCTTTATCTATTCGTGTTTGTAGGTTTCATCTGTCAAGCGTTATTTTCTCCAACAAACACCAAACTGAGCAGCTTGATTCATCTCTATGCTCTAAGGCAAAATGtctatgttaatgttaaatatatatctacataAATTAAGTAACATTTTGGCTTGTGTCTTAAATAATATGGACTGAGTAAATAAACAATCTTTTTTACTTTGTCTGAATGTTTTTGTCTGCTCTTAAAAGCTGAGTTGTTTCAAACCAATCTTGGATCAAATATGGACTAACCCTCTGCTGGGTTAAGAAGTGGATGTGAAACTTTAACCCAACCTTGGGttggcatttaaaatatataatatacacaataGTTTAGCTGTaactaattattttgttattggtTTAAAGTGTTTTTCCTTCAAATGGTTTTCACACATAGTTTGAGAAGGTTCTGTGATCGTAATGAAGCGACGTGATGAGTTTGTTGATCTGGAGTGTTTTTGGATCATCAGCGCTCCGATCTGAGGCCGGTGAGGATGTTTTACCTCCAGGTCTTTGGTGATGGGGTGATGAGCTCCGTGTGTGATGATGAGGATGGCGTAAGCGCGGCAGACCAGCGAGTGAGCGCTCTCGATCTGTCCGGCGTGCCAGTGTGTGACGCCCGCTCTCATCATGGCCATGCCCAGCTGAGCGTTATTGGGATGATAGAGTTTCCTGAGAGAGAACAGAGTCAGACGCTGCTTTCACAGTCTCTGGAATCACGAGGAGATTTCCCGTCAGGGCCAGAAATACCTCTTATCGTGACATACgctatatggacaaaagtattggcaccccCTTCTAATAAACACGTTTAACTACTTTAGCACTATCCATGAGTACAGATCTTAATGTTTGAGCTTACAATGATATTCTAGGAAATTGTGTGCTTTTAATTGTATAGCAAACGTTTGGATAGGACCCTTTTCCAATCTAACATGAATATccctctgtgtataaggcaaggttGAAAAAGAAATTGACTGGTCTGAGGAACAGACCTTGAACAAAGAACTCATCACCAAAGACCAATGAcatatatggacaaaagtattggcaccccCTTCTATtcttctaattttatagcaacagtttggacagaaCCCTTTTCTATTCTGACATGATCTGACAACACCCCTAACATGACAATACCAAAAacaatgacttgtacatatggCTACAGTAATGTTAGACACTTTTTTTAGACAATTTTAGAAACTGTTGCAAAAGGGATAGAAAGACAATTTTGGAAACACATGAATAACGTTTCCTTTTTGTTGTCAAAGTTTGGGAAATACTTTCGTCCATATAGTGTATGTACAAGGcattggtgtttggtgatgacTTACCATATCATgcactcataaaaaaaaaaaaatatatatatatatatcatgtatttTGTATGAAACACTAAATTCAGAAGggggtgccaatacttttggcaatatagtgtagaCAAAAGACATTTTCCTAATCAACATATTACTACTCCAAACCTGCCATTACATCTTTTTAGAGCTAATTACAGAAGTTTTTAGCcattgaaagatttttttttgctccctcagattccagattccAGACACTgtccgatcctaacaaaccagacatcagtggaatgattatttattcacttgagatgttttgaagtcacattttattcttattctaaTCTTAAAATTTCAGCAGAATATATTTAGTcggcatattttcacattttacatgTCATGATGTTCATTATCACTTACACTCCTGATGAGAACCTGGGGCTCTTCTCAGTGTCAGAACAGCTCAGACTCACGTGTATCCGTCCAGAACACGCTGGGTGTATCCCGACGCTTCGCTGAACTGATGCATGAAGGACAGGACCTCGCTGGCGATGCTGAGGACGCGCAGCAGATGAAGGTTTGTGTCTCCAAACACAGGACCCTGCTTCTCCAGACACTCACGGCAGAGCTTCACCACCTACAGCCAGACGCTACTGCTTtcacacattcattttcaatcaCCTCTTTATATTGCTATCTGTTTGTCACTTGGGCTCTGAGAATATAAGTTTTGATGCAACCCGTGttgttaaaagataaaaatgattgattgattgataagtatacaatatactaatataatatacaattttaatcCAAATCAAAGCCTAGCGCTCCAGCTCTTTAAGTCTGTGTCAGTCAGGGTTCTGTTGGACTCACCTCCTGGAAGTTTCCTTCAGTACGAGCCTCTTCGATCTTAACCAGAGCCTGAAGACTGAAATCTGTCACTGCCTTCACCACGTCAGCAGAcggctgcacacacacacacacacacacacacacacacacagtcactaaCAGGGCTGTCACGAATCACATTTAactagtaaataaatgtatctgtAATCAAGTGTTTAAATTACgtattacttttgaaaatgttattgaTTACAAAGGAGGTGacatttgaattttttcacacacacacacacacgcaaaacacacacacacactcactcactcacaca
>TU43430
GTTACTTAAAGTATCTGAAGTAGTTACACCAAACTACAACTCAACAACTCTCTCGTCTCCAAACCTTGTTCCCGTCGCTGTCTCTGACGGCCGTCATCAGCTGGTCTTCGGTGGCGCTCGAGCAGTGCTCACACTTACAGTCGAAGTAATACCTCTTCTTGAGCAGCTGCTGGCGCTCCTTGGAGACGTTGAGGAAGTCCACGTAGCTGATGGTCAGCTCTTCTCCTTCAGAGATCTTCTCCAGAGCCCTCAGCTCGATCCTGCCTCAGGTCACAGACAGTCTCACAAACATTCATCTCCAGGGAACGACTTCAAAAGAGCAAATCAAAGCGGAAACACGAGCCCTGCAGCGAGAATCACTCGAACTCTTTTATGTAATGTTCACTAATCAGGAGCTTTCAGCACGTCACAATAAAGTTCAGTTCCTAGACGCATTAAACTATCATCTGAATGGATGTATTTTTTCacacttatttttataaaaaattcccctcatgtcgttccagaCTTGTTTGACTTTATTCCCAGAGGAACCAGGGTTATCAtcgttaactaaaactaaaaaagctctttttgtcaaaacaaaaccaacgaataaacaaaataaataaataaatatatgtagagtttgtttgcaaaaactttttaaagtgttcagaaatagtgttttttaatacgttaacatgtttttattgtgcgaggtaactgtatttttttattttgtaacctAATCCACGATTAaatgagattaattggaatgcttaatgaaaaaaatgagctttttataaattgtttttgcaaaaaccTATATCTACATttatacttacatttatttatatatatatgcattataacaCGCATTATAGTTTGTCAGCAGAAACtttgacaaacacacaaaagataCTAAATTACTACAAcctgaattaaaatgaagagacaatttaaataatatctaatttatgatatatatatataaataacacaaaaaattagtttttcatgCCATGAAAGTAATCGAGGGCTATCAAGCTCCAAAAACGTTCTGTCTTTTTTGAAGCATTCAGGGTTGACGTTCACGAGGAACAGAGAAAGAACGTCATGCCGGTCTGAAACGCTGTGTGCACTGCTAAGGGCGGGACTCACCTCCTCGTGGAGTGCAGCGAGGCGTCCAGAGCCGTCTGACTGCGGGAGAGAAACACTTGAGACTCAACACTCACTCCAGCGTCTGTGGGATTTCTCAGAGATGCACTCACTTGCCAGGGTTGAGGATGACGGTGCAGTTAGGCCAGCAGTCGTGGTTGACCAGACACAGGTTAGGGAAGAGCCCCACGCCCACGGCCTGCAGACCCCTCTGGTCACTCAGCGTGAAGCCATTGCAGTTGATCTGAGGACGAGACGGAAGGATTACAAAGACGACAGACGGCTCCGATTTCTCACGCAGACCCTAGAGACGAGGAATCAGCGCCCACCACGCCGAGGAGATGCGCCACGTAGTCCTCTCCCACGGGTTTGCTCTTTTTAGGCCAGTAGTTGTAGAAGTTCTGCACATCCACTTTGAGCTCTTTCAGGTCTTCGGGGGACGTTTTGGACAGGTGATCCTCCAGGAGGTCAAGGGTCGTGAGCTGAGCGTCAGAGACCAGGCCCGTGTCCTTCTGAATACGCCACAGGATCCGAGCCACCAGGCCACGTTCTCATTGGGCGCTGTCCCTGTCTTCCTGATGGCGGAGCACTCCTGCTTGTGTTCGTCCCAGGCGGCGCGCTGACACGTACGATCACAATAGTGTGCGAACTTACACTGAGCACAGCGGTGAGGGGTCACCTGACGCCGGAAACAGCTGTGACACACCTGCAGAGAGaggctgacacacacacacacacacacacacacacacacacacacacaccttcagtAGCATCCTTTTTTCCAGAGAACACACTTATTTTCATACCAGTGCTGTTCAGTGAACACTGATTGTATTTAAGGCAGGTTTCCTGAAAATGAGTGAACACTTCAAAGGTTTGGGAttagtatgatttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43427 True 3445 lncRNA 0.36 2 17916054 17919610
TU43430 False 2040 lncRNA 0.45 2 17920709 17922889

Neighbor

gene id symbol gene type direction distance location
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding upstream 460 17912439 ~ 17915594 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding upstream 13137 17901441 ~ 17902917 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding upstream 104591 17805840 ~ 17811463 (+)
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding upstream 250157 17644435 ~ 17665897 (+)
clocka clock,clocka,LOC107701480 coding upstream 285232 17582070 ~ 17630822 (+)
exosc2 exosc2,exos2 coding downstream 10416 17933305 ~ 17937916 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding downstream 16795 17939684 ~ 17963519 (+)
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding downstream 62104 17984993 ~ 17997658 (+)
lman2la lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173 coding downstream 279846 18202735 ~ 18210893 (+)
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding downstream 295827 18218716 ~ 18222320 (+)
G29329 NA non-coding upstream 60690 17854461 ~ 17855364 (+)
G29334 NA non-coding upstream 91789 17823250 ~ 17824265 (+)
G29331 NA non-coding upstream 97638 17818146 ~ 17818416 (+)
G29317 NA non-coding upstream 98121 17817546 ~ 17817933 (+)
G29306 NA non-coding upstream 169737 17745528 ~ 17746317 (+)
G29364 NA non-coding downstream 8995 17931884 ~ 17932404 (+)
G29476 NA non-coding downstream 76708 17999597 ~ 18002479 (+)
G29484 tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866 non-coding downstream 136446 18059335 ~ 18060916 (+)
G29544 NA non-coding downstream 512754 18435643 ~ 18460595 (+)
G29548 NA non-coding downstream 518742 18441631 ~ 18465837 (+)
atp5mj NA other upstream 875224 17038419 ~ 17040830 (+)
G28982 NA other upstream 1441673 16473898 ~ 16474381 (+)
G28899 NA other upstream 1930328 15985219 ~ 15985726 (+)
G28891 NA other upstream 2074199 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2260776 15565499 ~ 15655278 (+)
G29526 NA other downstream 377526 18300415 ~ 18301189 (+)
G29545 NA other downstream 513571 18436460 ~ 18461317 (+)
G29642 NA other downstream 960290 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1367331 19290220 ~ 19342911 (+)
G29835 NA other downstream 1808373 19731262 ~ 19786128 (+)

Expression


Co-expression Network