G29334


Basic Information

Item Value
gene id G29334
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17823250 ~ 17824265 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43463
ACTGGAAAGGAAATCAAATGTAGAAAAACACCAAGCTgtgtttaaatagatttatttttaaaaagaacaatatacagaaataaatacacatatatatatagaaatatatttatatatagaccTATAGAATCAATTATAAATGCTTCCTGAGCAGgctatttaacaaataaaagtcggatgcaattatatatatatatatatatatatacatagggGAATATTTCTTAGCGCTTCTCCATTCGTCTCTTATGGTCTCGGAGGAGCAAAATACTCAAACTAGGCTTCTCAGTTAAgcttgcatttctttttttcaacaaCCCCGATGACGTGATAGAactcctctttctttctcggTGAGTCTTTCCGCT
>TU43464
AAAACGATCGACGGCGAATAAAAGATGTCTGACTGAGAACACTGTCGTGTATGTGTAAGAGAATCCCGTTTAAAAGCAGTGTAGACGATGTTTGGCTAGATACATGGATTTTTCTGCTGGCTGCTCTCTGTAGGTCTTGTCATTTTGAAAGTTTTCCCCTTTATAAAGAAAGAACACAGAGACCGAGTTCACGAGCAGGGATGTTGTAGTGTTAGTGTGTGGAGAAGAACTGCTGCTTCTCTCTACTTTAGGTGTTTTTTTGGTGTCGTACCCTGCGGTGGAGAGCAAAACCAGCATCATCTGAGCGACTTGGTGTGCATCTCATAGTTAGCTCAttcaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatataTAAAGACTCAGATCAAACAGCTTGCAGCTTGTGGACACACAATACAGTTCAAGCAACAATGTACAAACCGTTAAAATGGTGCTATAAAGTGTCCCGCTGGCTGGT
>TU43465
TTTGAAAGTTTTCCCCTTTATAAAGAAAGAACACAGAGACCGAGTTCACGAGCAGGGATGTTGTAGTGTTAGTGTGTGGAGAAGAACTGCTGCTTCTCTCTACTTTAGGTGTTTTTTTGGTGTCGTACCCTGCGGTGGAGAGCAAAACCAGCATCATCTGAGCGACTTGGTGTGCATCTCATAGTTAGCTCAttcaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatataTAAAGACTCAGATCAAACAGCTTGCAGCTTGTGGACACACAATACAGTTCAAGCAACAATGTACAAACCGTTAAAATGGTGCTATAAAGTGTCCCGCTGGCTGGTGGCTTTTCTTAACTTCTCCTGTTTGTGGTCA
>TU43468
TTTGAAAGTTTTCCCCTTTATAAAGAAAGAACACAGAGACCGAGTTCACGAGCAGGGATGTTGTAGTGTTAGTGTGTGGAGAAGAACTGCTGCTTCTCTCTACTTTAGGTGTTTTTTTGGTGTCGTACCCTGCGGTGGAGAGCAAAACCAGCATCATCTGAGCGACTTGGTGTGCATCTCATAGTTAGCTCAttcaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatataTAAAGACTCAGATCAAACAGCTTGCAGCTTGTGGACACACAATACAGTTCAAGCAACAATGTACAAACCGTTAAAATGGTGCTATAAAGTGTCCCGCTGGCTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43463 False 368 lncRNA 0.31 1 17823898 17824265
TU43464 True 491 lncRNA 0.44 1 17823250 17823740
TU43465 False 379 lncRNA 0.44 1 17823393 17823771
TU43468 False 348 lncRNA 0.45 1 17823393 17823740

Neighbor

gene id symbol gene type direction distance location
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding upstream 11787 17805840 ~ 17811463 (+)
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding upstream 157353 17644435 ~ 17665897 (+)
clocka clock,clocka,LOC107701480 coding upstream 192428 17582070 ~ 17630822 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding upstream 244446 17565453 ~ 17578804 (+)
LOC122342653 l3hypdh,LOC107684001 coding upstream 332955 17483433 ~ 17490295 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding downstream 77176 17901441 ~ 17902917 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding downstream 88174 17912439 ~ 17915594 (+)
exosc2 exosc2,exos2 coding downstream 109040 17933305 ~ 17937916 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding downstream 115419 17939684 ~ 17963519 (+)
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding downstream 160728 17984993 ~ 17997658 (+)
G29331 NA non-coding upstream 4834 17818146 ~ 17818416 (+)
G29317 NA non-coding upstream 5317 17817546 ~ 17817933 (+)
G29306 NA non-coding upstream 76933 17745528 ~ 17746317 (+)
G29305 NA non-coding upstream 83583 17738067 ~ 17739667 (+)
LOC122343158 NA non-coding upstream 111539 17710055 ~ 17711711 (+)
G29329 NA non-coding downstream 30196 17854461 ~ 17855364 (+)
G29320 NA non-coding downstream 60063 17884328 ~ 17965751 (+)
G29318 LOC107745315,LOC107597934 non-coding downstream 91789 17916054 ~ 17922889 (+)
G29364 NA non-coding downstream 107619 17931884 ~ 17932404 (+)
G29476 NA non-coding downstream 175332 17999597 ~ 18002479 (+)
atp5mj NA other upstream 782420 17038419 ~ 17040830 (+)
G28982 NA other upstream 1348869 16473898 ~ 16474381 (+)
G28899 NA other upstream 1837524 15985219 ~ 15985726 (+)
G28891 NA other upstream 1981395 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2167972 15565499 ~ 15655278 (+)
G29526 NA other downstream 476150 18300415 ~ 18301189 (+)
G29545 NA other downstream 612195 18436460 ~ 18461317 (+)
G29642 NA other downstream 1058914 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1465955 19290220 ~ 19342911 (+)
G29835 NA other downstream 1906997 19731262 ~ 19786128 (+)

Expression


Co-expression Network