G29408 (LOC107755246,LOC107683958,LOC107718397)


Basic Information

Item Value
gene id G29408
gene name LOC107755246,LOC107683958,LOC107718397
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17699424 ~ 17701373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43565
GGACTCTGGAAGGCAACACAGTTAAATCCGGACAATATCAACTCAATGTCCGCCTCgttcCAGACGAACCTCCTGTGATCACTCTGGGTCAGGCTCAGAGAGTGCTGCTCATCCAGGGGGAGGAGCTCTCCCTATCCTGCAACACCTCAAATGTCAACAGCGACATCACAATCAGGTGGAAGGCTCCTCAAGGAGTGCAACCATCAGTGCTGCAGTTCTCGAGTATCCTGACCGAACCCATTTCTCACCTGAGGAATGCCACCCTAAACCTGGGATCTGTAACCAAGCAGGATGCAGGAAGTTACAACTGCGAGGCCCGGAACGAAAGAGGGACCAGTGCAAAGACGGTCTGGGTC

Function

NR:

description
PREDICTED: mast/stem cell growth factor receptor kita-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43565 True 356 lncRNA 0.54 3 17699424 17701373

Neighbor

gene id symbol gene type direction distance location
tmem165 tmem165,LOC107683960,LOC107665411,LOC107718400,LOC107755243,LOC107601909,LOC107573988 coding downstream 63135 17631493 ~ 17636289 (-)
daam1b daam1b,LOC107701451,LOC107755211,LOC107718401,LOC108412077 coding downstream 147078 17488260 ~ 17552346 (-)
LOC122343418 LOC107683962,LOC107701452,LOC107755208,LOC107601897,LOC107568118,LOC107718425 coding downstream 216669 17411018 ~ 17482755 (-)
btbd6b btbd6b,LOC107589075,LOC107755235,LOC107718408,LOC107560384,LOC107701487,LOC107683969 coding downstream 556144 17138065 ~ 17143280 (-)
LOC122342663 NA coding downstream 569159 17123907 ~ 17130265 (-)
LOC122343120 LOC107746441,LOC107599206,LOC107661202 coding upstream 9822 17711195 ~ 17713523 (-)
LOC122343083 NA coding upstream 12373 17713746 ~ 17717051 (-)
LOC122343057 NA coding upstream 16391 17717764 ~ 17719790 (-)
LOC122342227 NA coding upstream 18775 17720148 ~ 17726796 (-)
LOC122343038 LOC107698808,LOC107743352 coding upstream 27149 17728522 ~ 17731397 (-)
G29388 NA non-coding downstream 56787 17642379 ~ 17642637 (-)
G29273 NA non-coding downstream 145460 17553762 ~ 17553964 (-)
G29212 NA non-coding downstream 349918 17349289 ~ 17349506 (-)
G29179 NA non-coding downstream 479971 17219151 ~ 17219453 (-)
G29143 NA non-coding downstream 658590 17038827 ~ 17040834 (-)
LOC122343157 tatdn1 non-coding upstream 31030 17732403 ~ 17733334 (-)
G29420 NA non-coding upstream 48438 17749811 ~ 17814034 (-)
G29425 NA non-coding upstream 94699 17796072 ~ 17805409 (-)
G29440 NA non-coding upstream 116189 17817562 ~ 17817933 (-)
G29442 LOC107599601 non-coding upstream 117987 17819360 ~ 17822470 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 60682 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 577295 17118343 ~ 17122129 (-)
G29135 NA other downstream 681601 17006927 ~ 17017823 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other downstream 799129 16886153 ~ 16900295 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 990464 16707774 ~ 16708960 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 33233 17734606 ~ 17744543 (-)
G29417 NA other upstream 33977 17735350 ~ 17736274 (-)
G29473 NA other upstream 269232 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 707187 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 953871 18655244 ~ 18661653 (-)

Expression


Co-expression Network