G29442 (LOC107599601)



Basic Information


Item Value
gene id G29442
gene name LOC107599601
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17819360 ~ 17822470 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU43613
CCCGGCGCCGACCTCGGCGATCTTGATGAACCTGCCCTTCGAGTTCTGCTTGACGTCCAGGTAGAAGCGCTTGTTCTGGATGTCGAGGCGTTTGGACGCCAGCTCTTGGGTCTCCTGGTCCCTCTGGAACGCTTGGAACCCGCTCCCTCCGCCGCTTCCTCCGCCGCCGCGCTCGCTCCCGCTGTCCCCATCCGCCATCTTCACCATCACCCAGAGCTcggctgttttttttcccccagcgGTATTTCACAAGATCCCGCCTCCTGGCCGAGAGCGTCCTATGAACGGGCTGCAGCTCTGAAACGTCACCGCCATAGAAACATCTCGTGATTGTCCGCTTGACGTGTCAGTCATTCATTCGCCTCTCCCATTGGATCGTAACCCGTCTGTCACtaaaaACTGTTAAGTCCCGCCCCCTGTGTCATCCGTACAAACATCATTCATCGATGGGGGATGGTAGAAGCAGATGCATGCTGCAATCCCATTGGCCTACCCGATATTCGAATCAAC
>TU43614
CCCGGCGCCGACCTCGGCGATCTTGATGAACCTGCCCTTCGAGTTCTGCTTGACGTCCAGGTAGAAGCGCTTGTTCTGGATGTCGAGGCGTTTGGACGCCAGCTCTTGGGTCTCCTGGTCCCTCTGGAACGCTTGGAACCCGCTCCCTCCGCCGCTTCCTCCGCCGCCGCGCTCGCTCCCGCTGTCCCCATCCGCCATCTTCACCATCACCCAGAGCTcggctgttttttttcccccagcgGTATTTCACAAGATCCCGCCTCCTGGCCGAGAGCGTCCTATGAACGGGCTGCAGCTCTGAAACGTCACCGCCATAGAAACATCTCGTGATTGTCCGCTTGACGTGTCAGTCATTCATTCGCCTCTCCCATTGGATCGTAACCCGTCTGTCACGCAGGAGGAAAGGCAGGGAAAGACAGCGGCAAGGCCAAGGCGAA

Function


NR:

description
PREDICTED: transcriptional activator protein Pur-beta-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU43613 True 510 lncRNA 0.57 2 17820760 17822470
TU43614 False 437 lncRNA 0.60 2 17819360 17822470
Loading

Neighbor


gene id symbol gene type direction distance location
LOC122343038 LOC107698808,LOC107743352 coding downstream 87963 17728522 ~ 17731397 (-)
LOC122342227 NA coding downstream 92564 17720148 ~ 17726796 (-)
LOC122343057 NA coding downstream 99570 17717764 ~ 17719790 (-)
LOC122343083 NA coding downstream 102309 17713746 ~ 17717051 (-)
LOC122343120 LOC107746441,LOC107599206,LOC107661202 coding downstream 105837 17711195 ~ 17713523 (-)
ckap2l NA coding upstream 17594 17840064 ~ 17851149 (-)
LOC122342984 LOC100150651,LOC107755845,LOC107668749,LOC107599606 coding upstream 32231 17854701 ~ 17880796 (-)
dqx1 dqx1,LOC107597950 coding upstream 62249 17884719 ~ 17898867 (-)
thnsl2 thnsl2,LOC107597948,LOC107578849,LOC107735618 coding upstream 81106 17903576 ~ 17912432 (-)
smyd1a smyd1,LOC107745315,LOC107597934 coding upstream 93101 17915571 ~ 17926697 (-)
G29440 NA non-coding downstream 1427 17817562 ~ 17817933 (-)
G29420 NA non-coding downstream 5326 17749811 ~ 17814034 (-)
G29425 NA non-coding downstream 13951 17796072 ~ 17805409 (-)
LOC122343157 tatdn1 non-coding downstream 86026 17732403 ~ 17733334 (-)
G29408 LOC107755246,LOC107683958,LOC107718397 non-coding downstream 117987 17699424 ~ 17701373 (-)
G29445 NA non-coding upstream 749 17823219 ~ 17824264 (-)
LOC122343170 NA non-coding upstream 6116 17828586 ~ 17829943 (-)
G29457 NA non-coding upstream 50682 17873152 ~ 17940789 (-)
G29487 NA non-coding upstream 162543 17985013 ~ 17985818 (-)
G29656 NA non-coding upstream 558520 18380990 ~ 18409895 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 74817 17734606 ~ 17744543 (-)
G29417 NA other downstream 83086 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 180618 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 697231 17118343 ~ 17122129 (-)
G29135 NA other downstream 801537 17006927 ~ 17017823 (-)
G29473 NA other upstream 148135 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 586090 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 832774 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 870532 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 1076337 18898807 ~ 18902552 (-)

Expression


G29442(LOC107599601) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G29442(LOC107599601) Expression in each Bioproject

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G29442(LOC107599601) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network