G29445


Basic Information

Item Value
gene id G29445
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17823219 ~ 17824264 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43617
GCGGAAAGACTCAccgagaaagaaagaggagtTCTATCACGTCATCGGGGttgttgaaaaaaagaaatgcaagcTTAACTGAGAAGCCTAGTTTGAGTATTTTGCTCCTCCGAGACCATAAGAGACGAATGGAGAAGCGCTAAGAAATATTCccctatgtatatatatatatatatatatataattgcatccgacttttatttgttaaatagcCTGCTCAGGAAGCATTTATAATTGATTCTATAggtctatatataaatatatttctatatatatatgtgtatttatttctgtatattgttctttttaaaaataaatctatttaaacacAGCTTGGTGTTTTTCTACATTTGATTTCCTTTCCAGTTACGTCACCGGCTCTAAAACGACTAATTCGCCCGCCGAGGTCATCCCGGTGAATTTAGCGGCGTCCAGCGGCACCGATGATGCTCTTCCCGACTCGGACCGTCCGCCGGAACGATTAGCTGGACCCTGACCACAAACAGGAGAAGTTAAGAAAAGCCACCAGCCAGCGGGACACTTTATAGCACCATTTTAACGGTTTGTACATTGTTGCTTGAACTGTATTGTGTGTCCACAAGCTGCAAGCTGTTTGATCTGAGTCTTTAtatatgcgcacacacacacacacacacacacacacacacacacatcctgaaTGAGCTAACTATGAGATGCACACCAAGTCGCTCAGATGATGCTGGTTTTGCTCTCCACCGCAGGGTACGACACCAAAAAAACACCTAAAGTAGAGAGAAGCAGCAGTTCTTCTCCACACACTAACACTACAACATCCCTGCTCGTGAACTCGGTCTCTGTGT
>TU43619
CAGCCAGCGGGACACTTTATAGCACCATTTTAACGGTTTGTACATTGTTGCTTGAACTGTATTGTGTGTCCACAAGCTGCAAGCTGTTTGATCTGAGTCTTTAtatatgcgcacacacacacacacacacacacacacacacacacatcctgaaTGAGCTAACTATGAGATGCACACCAAGTCGCTCAGATGATGCTGGTTTTGCTCTCCACCGCAGGGTACGACACCAAAAAAACACCTAAAGTAGAGAGAAGCAGCAGTTCTTCTCCACACACTAACACTACAACATCCCTGCTCGTGAACTCGGTCTCTGTGTTCTTTCTTTATAAAGGGGAAAACTTTCAAAATGACAAGACCTACAGAGAGCAGCCAGCAGAAAAATCCATGTATCTAGCCAAACATCGTCTACACTGCTTTTAAACGGGATTCTCTTACACATACACGACAGTGTTCTCAGTCAGACATCTTTTATTCGCCGTCGATCGTTTTCATGCATCCCCCTCCGGAGCGCGGCTCTCTC
>TU43620
CAGCCAGCGGGACACTTTATAGCACCATTTTAACGGTTTGTACATTGTTGCTTGAACTGTATTGTGTGTCCACAAGCTGCAAGCTGTTTGATCTGAGTCTTTAtatatgcgcacacacacacacacacacacacacacacacacacatcctgaaTGAGCTAACTATGAGATGCACACCAAGTCGCTCAGATGATGCTGGTTTTGCTCTCCACCGCAGGGTACGACACCAAAAAAACACCTAAAGTAGAGAGAAGCAGCAGTTCTTCTCCACACACTAACACTACAACATCCCTGCTCGTGAACTCGGTCTCTGTGTTCTTTCTTTATAAAGGGGAAAACTTTCAAAATGACAAGACCTACAGAGAGCAGCCAGCAGAAAAATCCATGTATCTAGCCAAACATCGTCTACACTGCTTTTAAACGGGATTCTCTTACACATACACGACAGTGTT

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43617 True 842 lncRNA 0.42 1 17823423 17824264
TU43619 False 520 lncRNA 0.46 1 17823219 17823738
TU43620 False 452 lncRNA 0.44 1 17823287 17823738

Neighbor

gene id symbol gene type direction distance location
LOC122343038 LOC107698808,LOC107743352 coding downstream 91822 17728522 ~ 17731397 (-)
LOC122342227 NA coding downstream 96423 17720148 ~ 17726796 (-)
LOC122343057 NA coding downstream 103429 17717764 ~ 17719790 (-)
LOC122343083 NA coding downstream 106168 17713746 ~ 17717051 (-)
LOC122343120 LOC107746441,LOC107599206,LOC107661202 coding downstream 109696 17711195 ~ 17713523 (-)
ckap2l NA coding upstream 15800 17840064 ~ 17851149 (-)
LOC122342984 LOC100150651,LOC107755845,LOC107668749,LOC107599606 coding upstream 30437 17854701 ~ 17880796 (-)
dqx1 dqx1,LOC107597950 coding upstream 60455 17884719 ~ 17898867 (-)
thnsl2 thnsl2,LOC107597948,LOC107578849,LOC107735618 coding upstream 79312 17903576 ~ 17912432 (-)
smyd1a smyd1,LOC107745315,LOC107597934 coding upstream 91307 17915571 ~ 17926697 (-)
G29442 LOC107599601 non-coding downstream 749 17819360 ~ 17822470 (-)
G29440 NA non-coding downstream 5286 17817562 ~ 17817933 (-)
G29420 NA non-coding downstream 9185 17749811 ~ 17814034 (-)
G29425 NA non-coding downstream 17810 17796072 ~ 17805409 (-)
LOC122343157 tatdn1 non-coding downstream 89885 17732403 ~ 17733334 (-)
LOC122343170 NA non-coding upstream 4322 17828586 ~ 17829943 (-)
G29457 NA non-coding upstream 48888 17873152 ~ 17940789 (-)
G29487 NA non-coding upstream 160749 17985013 ~ 17985818 (-)
G29656 NA non-coding upstream 556726 18380990 ~ 18409895 (-)
G29662 NA non-coding upstream 611381 18435645 ~ 18465837 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 78676 17734606 ~ 17744543 (-)
G29417 NA other downstream 86945 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 184477 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 701090 17118343 ~ 17122129 (-)
G29135 NA other downstream 805396 17006927 ~ 17017823 (-)
G29473 NA other upstream 146341 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 584296 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 830980 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 868738 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 1074543 18898807 ~ 18902552 (-)

Expression


Co-expression Network