G29484 (tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866)


Basic Information

Item Value
gene id G29484
gene name tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18059335 ~ 18060916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43674
gtttttaattagtttgaacCAAAGCACTTAAACACACAACAGTTGATGAAAACGATGGCACATGATTGTTGTCTGCTAGAGAAACTAGATCAGTTACAGACGCGGAGGAGACGCGAGGAACAAGGAAAGGCTCACAAACTATTTCACACACGTCAAGAATAAATTAAGTGAAGCTccctcaaacaaacaaacaaacaaataaacaaacaaacaacctCGGTTGTATTTACAAGCAATattcatatgaaataattacataaatatgttatatatatatatatatcgttatTTACATTAGTATTTATTCTAACCATATGATCCTTCCCGGTTCATCTCCAAGCTGTGTTTTATAAGTATCTTTTAGTACCGCGTCTGTTCATCGACTAATCAGTGGTCTGTGTCTTTCCTCATTTctcatattcataaatataaatagaaaaaaccCCAGAGATGTGGGCAGCTGACGAATTAAACCCGAACCGTGGTGTGGATgatgtgaaaaacacaaaatacatgagaaaaaaaaaaaaagagtatctTCATTTTAGAGATAGAAATAACACGAGAGAGCTTTAATATTGAAggtttatctttctttctttcttttctttttatgccaCACCATAAGAACGTCGacaaccatatatatatatataaagaaagtgTTTTCTCCGTCACATTGCAAACATCTGCAGTTTAGATTGTACTGTTGGTGAATCTTAGAGTCTACAGAAGAAAGCATTAACttaaaagaagaaacagaagcAGTCTGGATCAAGTCTAATCTTCGACATGCAGTGCTCCTCCGGACACCAACTCAATCATTTATACGTTTTCAAATAAAGCAAGAACCGATTCGGAGCgcgttttaaattaaatgactgTCACctgaagaagaacaaaaagaGCAGCAGCAGCTTTATTCACATCATCGCCGAACTCTTCAATACTTCTCTGGTATTCATagtaggggggaaaaaaatcactgttttaatttaacaaaagaacaacatacATCTAcgcgctgattttttttttttgtttgtttgttttttaccaaAGTGCATTTCGAGTCTGATCGTTCCTCCGGTCGGGTCCGTGCTGTAAACCGGGGTCTACGGAGACACGCTGCGCGCCCGGTCCGGCTTGGACTCGAGGCCGCTGACCAGGCGCTGGATGCTCTGTAACTCGCTGCTGGAGTCCTTCTCGGAGCACGGTTTAGGAGACAGCGACACCGAACCGGACGAGCGGCCGGTCATCTCGGAGTCCATAGCCGCCGAGGCGTCTCCCTTCAGATCCACGGCGCCGCTCGTCATGGACGGGACGGCCGTCGTGAGCAAAGTGCTGTCGGGGACGCTCGGTAAAGAGTAAGGGCTGTACCGTAACCGGGGCCGCACCGCGTTCAGAAACGGATGGCGGTGAACCGATGAGGAGGCGGCGGATGAAGCGGCTGCGGCGGCGGCCATGTACGTGTACGGGTACGGGAAGAGCCCTCCGAACGGGGACATGGCC

Function

symbol description
tbx3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic heart tube development. Predicted to be located in nucleus. Is expressed in several structures, including notochord; otic vesicle; pectoral fin bud; pericardial region; and visual system. Human ortholog(s) of this gene implicated in ulnar-mammary syndrome. Orthologous to human TBX3 (T-box transcription factor 3).

NR:

description
PREDICTED: T-box transcription factor TBX3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43674 True 1512 lncRNA 0.44 2 18059335 18060916

Neighbor

gene id symbol gene type direction distance location
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding upstream 61677 17984993 ~ 17997658 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding upstream 95816 17939684 ~ 17963519 (+)
exosc2 exosc2,exos2 coding upstream 121419 17933305 ~ 17937916 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding upstream 143741 17912439 ~ 17915594 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding upstream 156418 17901441 ~ 17902917 (+)
lman2la lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173 coding downstream 141819 18202735 ~ 18210893 (+)
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding downstream 157800 18218716 ~ 18222320 (+)
rab21 rab21,zgc:154045,LOC107687573,LOC107690748,LOC106609839 coding downstream 486615 18547531 ~ 18554389 (+)
trim24 trim24,LOC107709964,LOC107687572,LOC107747644,LOC107562152,LOC107690747 coding downstream 495653 18556569 ~ 18565366 (+)
LOC122343002 NA coding downstream 558635 18619551 ~ 18627271 (+)
G29476 NA non-coding upstream 56856 17999597 ~ 18002479 (+)
G29320 NA non-coding upstream 93584 17884328 ~ 17965751 (+)
G29364 NA non-coding upstream 126931 17931884 ~ 17932404 (+)
G29318 LOC107745315,LOC107597934 non-coding upstream 136446 17916054 ~ 17922889 (+)
G29329 NA non-coding upstream 203971 17854461 ~ 17855364 (+)
G29544 NA non-coding downstream 374727 18435643 ~ 18460595 (+)
G29548 NA non-coding downstream 380715 18441631 ~ 18465837 (+)
LOC122343196 NA non-coding downstream 530531 18591447 ~ 18594116 (+)
G29591 NA non-coding downstream 539512 18600428 ~ 18603316 (+)
G29600 NA non-coding downstream 601944 18662860 ~ 18665083 (+)
atp5mj NA other upstream 1018505 17038419 ~ 17040830 (+)
G28982 NA other upstream 1584954 16473898 ~ 16474381 (+)
G28899 NA other upstream 2073609 15985219 ~ 15985726 (+)
G28891 NA other upstream 2217480 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2404057 15565499 ~ 15655278 (+)
G29526 NA other downstream 239499 18300415 ~ 18301189 (+)
G29545 NA other downstream 375544 18436460 ~ 18461317 (+)
G29642 NA other downstream 822263 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1229304 19290220 ~ 19342911 (+)
G29835 NA other downstream 1670346 19731262 ~ 19786128 (+)

Expression


Co-expression Network