G29653 (LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424)


Basic Information

Item Value
gene id G29653
gene name LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18408560 ~ 18428343 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43941
CTGGTTTATGTGTTGCTGACATCAGAGCAAAAGATGGATGTCTTTGATCTAAAACAGTTTGTTGGAAAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATTAGTTCTgctatgtggatgcaaactcactgctcagtcttgtgaaagtttgtcttcagttcaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggagattctgagattgtctggctgtatggtgacagagaaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactagAGGACTCAACCTGCTCATTGGACAAACTGAAaGTTGATCATGGAGGAGAAACCAGGATTACAGAAGGACTGAAGAAATatgagtgttttttcacactggatccaaacacagcacacactcgtCTCATtatgtctgaggagaacagaaaggtgaagtgtgtgtctcagtctcagtcATACCCTGATCATCCAGATAGATTTGAAGTGTATCCTCAG

Function

NR:

description
PREDICTED: protein NLRC3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43941 True 666 TUCP 0.43 5 18408560 18428343

Neighbor

gene id symbol gene type direction distance location
wbp1 LOC107670394,LOC107728527,LOC106563291 coding downstream 190032 18213547 ~ 18218528 (-)
mtfp1 mtfp1,LOC107565646,LOC107566856 coding downstream 206429 18199050 ~ 18202131 (-)
LOC122343062 NA coding downstream 212039 18193309 ~ 18196521 (-)
tbx3a LOC107742157,LOC107597930,LOC107687999,LOC107728866,LOC107566860,LOC107670392 coding downstream 341395 18059325 ~ 18067165 (-)
tbx5a tbx5,LOC107670381,LOC107729059,LOC107745406,LOC107688016 coding downstream 366612 18028498 ~ 18041948 (-)
LOC122342232 LOC107685875,LOC107749047,LOC107728228,LOC107671223 coding upstream 17109 18445452 ~ 18476759 (-)
ptprr ptprr,LOC107684538,LOC107709966,LOC107690749,LOC107747646 coding upstream 97663 18526006 ~ 18544653 (-)
LOC122343050 LOC107685395,LOC107754219,LOC107554754 coding upstream 139820 18568163 ~ 18571675 (-)
LOC122342233 LOC107685397,LOC107554760 coding upstream 143362 18571705 ~ 18579003 (-)
LOC122343042 NA coding upstream 151308 18579651 ~ 18583442 (-)
G29487 NA non-coding downstream 422742 17985013 ~ 17985818 (-)
G29457 NA non-coding downstream 467771 17873152 ~ 17940789 (-)
LOC122343170 NA non-coding downstream 578617 17828586 ~ 17829943 (-)
G29445 NA non-coding downstream 584296 17823219 ~ 17824264 (-)
G29442 LOC107599601 non-coding downstream 586090 17819360 ~ 17822470 (-)
G29662 NA non-coding upstream 7302 18435645 ~ 18465837 (-)
G29663 NA non-coding upstream 8224 18436567 ~ 18461313 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding upstream 128157 18556500 ~ 18559281 (-)
G29682 trim24,LOC107562152,LOC107690747,LOC107747644 non-coding upstream 134811 18563154 ~ 18564445 (-)
G29720 NA non-coding upstream 283405 18711748 ~ 18712103 (-)
G29473 NA other downstream 428638 17970605 ~ 17979922 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 664017 17734606 ~ 17744543 (-)
G29417 NA other downstream 672286 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 769818 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 1286431 17118343 ~ 17122129 (-)
LOC122343054 NA other upstream 226901 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 264659 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 470464 18898807 ~ 18902552 (-)
LOC122343130 NA other upstream 487983 18916326 ~ 18917533 (-)
G29787 NA other upstream 503193 18931536 ~ 18931875 (-)

Expression


Co-expression Network