G29682 (trim24,LOC107562152,LOC107690747,LOC107747644)


Basic Information

Item Value
gene id G29682
gene name trim24,LOC107562152,LOC107690747,LOC107747644
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18563154 ~ 18564445 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU43989
AAAATCCGTGCTGAGCTCATTGCAGTAAAGACGAAGCAGCAGTCGCTCACATTTCTgcacaaacaacaaataattgcagcgtttttaaaagatattcggaatgtaaagcttttttttaatgcaatagtTCTAGAActtattaaagttaaattagtTAGTTAATTGAAATCAGTTTATACTCTTTTATCCACAGGAGTGAAAGCGTCAGAATCCGGATCCTGCTTCACGTTGTTCGATTCTCCGCTAACGCCGATGTTATACTCCATTTGGAGAGGCGGTCAGTGTGGGGATATGGCAGCTAAGATGGAAGACTTTGGGACATTTGTCACAGCAGAGCAGTTCTCCTCCGTTCTGGCACACCGCACACCAGTCTTCATTGGGGTCTTCGTCTGCCTCTGGGGTCTTCTCGGACTGCTGCTCACCTTGTGgcgtttgagactgaacgcctgTGCTGTCTGGAAGACTAGCTTTAGCACTAGTGTTG

Function

symbol description
trim24 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm. Orthologous to human TRIM24 (tripartite motif containing 24).

NR:

description
PREDICTED: transcription intermediary factor 1-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43989 True 484 lncRNA 0.44 2 18563154 18564445

Neighbor

gene id symbol gene type direction distance location
ptprr ptprr,LOC107684538,LOC107709966,LOC107690749,LOC107747646 coding downstream 18501 18526006 ~ 18544653 (-)
LOC122342232 LOC107685875,LOC107749047,LOC107728228,LOC107671223 coding downstream 86395 18445452 ~ 18476759 (-)
LOC122343150 LOC107570416,LOC107749047 coding downstream 131720 18375327 ~ 18431434 (-)
wbp1 LOC107670394,LOC107728527,LOC106563291 coding downstream 344626 18213547 ~ 18218528 (-)
mtfp1 mtfp1,LOC107565646,LOC107566856 coding downstream 361023 18199050 ~ 18202131 (-)
LOC122343050 LOC107685395,LOC107754219,LOC107554754 coding upstream 3718 18568163 ~ 18571675 (-)
LOC122342233 LOC107685397,LOC107554760 coding upstream 7260 18571705 ~ 18579003 (-)
LOC122343042 NA coding upstream 15206 18579651 ~ 18583442 (-)
LOC122343043 LOC107724037,LOC107685393,LOC107554738 coding upstream 23218 18587663 ~ 18591387 (-)
LOC122342949 NA coding upstream 29874 18594319 ~ 18604310 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding downstream 3873 18556500 ~ 18559281 (-)
G29662 NA non-coding downstream 97317 18435645 ~ 18465837 (-)
G29663 NA non-coding downstream 101841 18436567 ~ 18461313 (-)
G29656 NA non-coding downstream 153259 18380990 ~ 18409895 (-)
G29487 NA non-coding downstream 577336 17985013 ~ 17985818 (-)
G29720 NA non-coding upstream 147303 18711748 ~ 18712103 (-)
LOC122343197 NA non-coding upstream 173370 18737815 ~ 18740781 (-)
G29726 NA non-coding upstream 180156 18744601 ~ 18747308 (-)
G29736 NA non-coding upstream 219160 18783605 ~ 18783915 (-)
G29738 LOC107710542 non-coding upstream 221751 18786196 ~ 18786692 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other downstream 134811 18408560 ~ 18428343 (-)
G29473 NA other downstream 583232 17970605 ~ 17979922 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 818611 17734606 ~ 17744543 (-)
G29417 NA other downstream 826880 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 924412 17637023 ~ 17638742 (-)
LOC122343054 NA other upstream 90799 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 128557 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 334362 18898807 ~ 18902552 (-)
LOC122343130 NA other upstream 351881 18916326 ~ 18917533 (-)
G29787 NA other upstream 367091 18931536 ~ 18931875 (-)

Expression


Co-expression Network