LOC122343174


Basic Information

Item Value
gene id LOC122343174
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20142703 ~ 20144488 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU44330
CTGGTTAAAGGTGTCGTCTTATTTCTCTGAAACTTGAATTCTTGAAGGGTCATCCTGAGACAGAAATGTagtcaatgttttattattttgcagacacacccacacatacacacctgaGTTCTGAGAAAGAGAAACTTAAGTGTAGCTGTGCGGGAAACAGAAGTCATCATGGAAAGAGAAACTCTCTCTGGATGATTTATAAACACGTACCCACAATACTGCATCAGCAGCAATACAGAGGACCGAGAAAAAGTTCTATTCAGCAACATGGATCCCAGAACCAGAAACAACTTCCTGCAGTGTAAGTCGCTATGAAAGCTAAAGCATACCCTGAGTAAGAATCACAGCAAAGCCCATTTTTCAGAATAGATAAGGCTTATCTTATTACGCCATAGTAACCCCACTGGCCAATGGTGTTCAAGTAAGTAATGTGAGCAGTGCTTGCAAAATAAGCGTGAATGTGTGCGGGATAATTCTGAGctacagacaaaaaaagtgaaaaatgcaaaatttggccaatttttttgttaatcaaag
>XR_006250694.1
CCTCTCATGTTATTTCAAACTCGCATAGACTCGTCGCtcctcagaacacaaattaagatattttatgcCATGTGAAATGTTGAGGGAAAAGCGGGTTTCACTTTCAATTCACGGCTGATGAAATTATGGTGGCTATCTGATACTACTGGTTAAAGacacacccacacatacacacctgaGTTCTGAGAAAGAGAAACTTAAGTGTAGCTGTGCGGGAAACAGAAGTCATCATGGAAAGAGAAACTCTCTCTGGATGATTTATAAACACGTACCCACAATACTGCATCAGCAGCAATACAGAGGACCGAGAAAAAGTTCTATTCAGCAACATGGATCCCAGAACCAGAAACAACTTCCTGCAGTGTAAGTCGCTATGAAAGCTAAAGCATACCCTGAGTAAGAATCACAGCAAAGCCCATTTTTCAGAATAGATAAGGCTTATCTTATTACGCCATAGTAACCCCACTGGCCAATGGTGTTCAAGTAAGTAATGTGAGCAGTGCTTGCAAAATAAGCGTGAATGTGTGCGGGATAATTCTGAGctacagacaaaaaaagtgaaaaatgcaaaatttggccaatttttttgtta

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU44330 False 537 lncRNA 0.39 2 20142703 20144343
XR_006250694.1 True 592 lncRNA 0.40 3 20142710 20144488

Neighbor

gene id symbol gene type direction distance location
trnal-cag_24 NA coding downstream 34964 20107657 ~ 20107739 (-)
trnal-aag_24 NA coding downstream 35744 20106877 ~ 20106959 (-)
trnal-aag_23 NA coding downstream 36516 20106105 ~ 20106187 (-)
trnal-cag_23 NA coding downstream 37644 20104977 ~ 20105059 (-)
trnal-aag_22 NA coding downstream 38422 20104199 ~ 20104281 (-)
LOC122342264 LOC107572684 coding upstream 567 20145055 ~ 20145645 (-)
LOC122343109 NA coding upstream 3447 20147935 ~ 20150658 (-)
LOC122343134 NA coding upstream 12667 20157155 ~ 20160273 (-)
LOC122343114 NA coding upstream 20221 20164709 ~ 20166414 (-)
LOC122342268 NA coding upstream 97127 20241615 ~ 20251885 (-)
G29853 NA non-coding downstream 161980 19980489 ~ 19980723 (-)
G29851 NA non-coding downstream 162344 19979957 ~ 19980359 (-)
G29847 NA non-coding downstream 166562 19975231 ~ 19976141 (-)
G29849 NA non-coding downstream 169256 19944294 ~ 19973447 (-)
LOC122343200 NA non-coding downstream 345446 19796736 ~ 19797257 (-)
G29889 NA non-coding upstream 1219 20145707 ~ 20147299 (-)
G29900 NA non-coding upstream 8406 20152894 ~ 20153445 (-)
trnal-aag_25 NA non-coding upstream 66068 20210556 ~ 20210638 (-)
trnal-aag_26 NA non-coding upstream 67974 20212462 ~ 20212543 (-)
trnal-cag_25 NA non-coding upstream 68753 20213241 ~ 20213322 (-)
LOC122343146 NA other downstream 132991 20000988 ~ 20009712 (-)
LOC122342243 NA other downstream 805211 19333729 ~ 19337492 (-)
G29787 NA other downstream 1210828 18931536 ~ 18931875 (-)
LOC122343130 NA other downstream 1225170 18916326 ~ 18917533 (-)
LOC122343082 NA other downstream 1240151 18898807 ~ 18902552 (-)
G29902 NA other upstream 92649 20237137 ~ 20238554 (-)
G29906 NA other upstream 136618 20281106 ~ 20282400 (-)
LOC122343123 NA other upstream 713935 20858423 ~ 20864406 (-)
LOC122343098 NA other upstream 904369 21048857 ~ 21053725 (-)
LOC122343113 LOC107749046 other upstream 1131734 21276222 ~ 21279043 (-)

Expression


Co-expression Network