LOC122343168


Basic Information

Item Value
gene id LOC122343168
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20303113 ~ 20311190 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU44344
aaaagaaaaagagcagcacAACCAGAACCCAGCTGCTTTTCTATAAAGAGTGACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTGAGACCAGAAGAAAAAGAGCAGCACAACCAGAACCCAGCTGCTTTTCTATAAAGAGTAACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTAAGCTCAGaagctacaacgtgagcgggcctgcctgagctacttccctaatacctcacagtggactccctcacgttatTAAGCACGGggaaacaccgagacgactcaccgctgcactcaccggatt
>TU44345
aaaagaaaaagagcagcacAACCAGAACCCAGCTGCTTTTCTATAAAGAGTGACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTGAGACCAGAAGAAAAAGAGCAGCACAACCAGAACCCAGCTGCTTTTCTATAAAGAGTAACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTAAGCTCAGAGATGATGAGATTGGAGACCTGCACAAGGATTCTCAACAACCAATACATGATGAATTACAAGGGTCAAAGGCCAAAACAAAACCAGTATGAAGAACATAGTATGAGAGCTTATTTGAGGGAATAAAACTCAAGAGAATCAAACCCTTCTGAACAG
>XR_006250688.1
tttagagtaaaagaaaaagagcagcacAACCAGAACCCAGCTGCTTTTCTATAAAGAGTGACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTGAGACCAGAAGAAAAAGAGCAGCACAACCAGAACCCAGCTGCTTTTCTATAAAGAGTAACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTAAGCTCAGAGATGATGAGATTGGAGACCTGCACAAGGATTCTCAACAACCAATACATGATGAATTACAA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04659 Th17 cell differentiation
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU44344 False 335 lncRNA 0.49 3 20309919 20311182
TU44345 True 373 lncRNA 0.42 3 20303113 20311182
XR_006250688.1 False 287 lncRNA 0.43 3 20303207 20311190

Neighbor

gene id symbol gene type direction distance location
LOC122343007 LOC107723241,LOC107659605,LOC107550566 coding downstream 33207 20266961 ~ 20269906 (-)
LOC122343064 LOC107723244,LOC107659594 coding downstream 36264 20263660 ~ 20266849 (-)
LOC122342268 NA coding downstream 51228 20241615 ~ 20251885 (-)
LOC122343114 NA coding downstream 136699 20164709 ~ 20166414 (-)
LOC122343134 NA coding downstream 142840 20157155 ~ 20160273 (-)
LOC122343112 NA coding upstream 19257 20330447 ~ 20333281 (-)
LOC122342952 LOC107575457,LOC107561645 coding upstream 257189 20568379 ~ 21492901 (-)
LOC122342969 LOC107575457,LOC107561645 coding upstream 279925 20591115 ~ 20615223 (-)
LOC122342955 LOC107575457 coding upstream 368900 20680090 ~ 20690873 (-)
LOC122342956 LOC107566978 coding upstream 381772 20692962 ~ 20716250 (-)
G29905 NA non-coding downstream 30824 20271106 ~ 20272289 (-)
trnal-aag_28 NA non-coding downstream 86874 20216160 ~ 20216239 (-)
trnal-aag_27 NA non-coding downstream 88781 20214249 ~ 20214332 (-)
trnal-cag_25 NA non-coding downstream 89791 20213241 ~ 20213322 (-)
trnal-aag_26 NA non-coding downstream 90570 20212462 ~ 20212543 (-)
G30238 LOC107561645,LOC107575457,LOC107747810,LOC107566978,LOC107667978,LOC107575420 non-coding upstream 10384 20321574 ~ 20440841 (-)
G30240 NA non-coding upstream 16716 20327906 ~ 20446324 (-)
LOC122343165 NA non-coding upstream 117421 20428611 ~ 20430685 (-)
G30254 NA non-coding upstream 157316 20468506 ~ 20468796 (-)
G30258 NA non-coding upstream 203627 20514817 ~ 20515117 (-)
G29906 NA other downstream 20713 20281106 ~ 20282400 (-)
G29902 NA other downstream 64559 20237137 ~ 20238554 (-)
LOC122343146 NA other downstream 293401 20000988 ~ 20009712 (-)
LOC122342243 NA other downstream 965621 19333729 ~ 19337492 (-)
G29787 NA other downstream 1371238 18931536 ~ 18931875 (-)
LOC122343123 NA other upstream 547233 20858423 ~ 20864406 (-)
LOC122343098 NA other upstream 737667 21048857 ~ 21053725 (-)
LOC122343113 LOC107749046 other upstream 965032 21276222 ~ 21279043 (-)
LOC122343135 NA other upstream 1016425 21327615 ~ 21336881 (-)
G30395 NA other upstream 1072279 21383469 ~ 21386437 (-)

Expression


Co-expression Network