G30025 (LOC107561645)


Basic Information

Item Value
gene id G30025
gene name LOC107561645
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20912558 ~ 20934912 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU44494
AAATTACTCACAGTGCTTTTCTGCAGCATTTCACAGCTGACAAGAGTATAGCGGAATTTGAAGATGATGATGTGAACCTCTTTGGGTTGAACTCATCCAGCACCTTCTCTGATATCAACAGTATGTAGGTCAGGACTGTGCACATTGAAGATGAGAGATCTCTTTCTGGATGTTCATCTGAACTGAGGTAACTCTGGATTTCCTCATATATTGAATGATCCTTGAGTTCAAGTAAGCAGTAGAATAGGTTGACTAGAGCTTCATCTGAGATATTGtgcttgttttgttcttgtttaatGTATTCACTTATTTTTGAGAGACTCTCTGTGGAGTCTTCGTTGTGTTGGAACAGGCCTTTAAGCAGGTGTTGACTGGATTTCAGTGAAATGCCCAACAAAAACCGTAGGAACAGGTCCAGATGTCCTCTcttattgttcatgtttttttcaatagCCTTCTGCAGTAACGTCTCCATTGTTATATTTTCTTCTGGCtcatcaaagaaaaactgaagctCCTGCATGTTCTTGTTCAGATAGCAGATGaacacatgcactgcagcaAGAAACTCTTGAACACTCAGATGCACAAAGCAGAAGACCTTTGCTCCATGAATTCCATGTTCCCTTTTGAAGATCTCAGCAATCATTCCTGTGAACTCAATGTCTTTACTCGCATCAATACCACATTCTTTTAGATCATCCTTatagaacacaatgttttccttttttagctGTTCAAATGCTAACTTGgctaatttcaaaataatttcccTGTTTGCTTCTAAGTGTTCTATGAATTCTCTTTCTTCTTGTTCTTCATATTTCTGGTTCTTCATGTCCATCTGTATAAGcaggaagtgaatgtacatttcagtgagtGTTGTGCTGATCTTCACTTCACTGTTCTCAGTGAGAATATCCTGAAGTACTGTGGctgtgatccagcagaacacaggaatgtggcacatgatgtagagactacgagacgtcttaatgtgtgagatgattctggaggACAGACTCTCATCTTTGATTCTCTTTCTGAAGTACTTCTCCTTCTGTTGGTCAGTGAATCCTCGCACCTCTGTAAACAAACCCACATACCGAGgaggaatctgattggctgctgctggtcgtgATGTGACCCAGACAAGAGCTGATGGAAGCAGAGTTCCTTTGACCAGACTTGTAAAGAGCACATCTACAGATGCTTTTTTCTCAGTAGTTTTCATTGATTTCCATCTAAAATTTAGAGGCAGCCGACTctcatcaagtccatcaaatataaatgctagCTTACATCCCTTATATAGCTTTGATTTCTCCAGGTTCTCCAGGTCAGGATAAAATTCCAGCAGAAACTCATGGAGACTGAAATCTTCAtttgtcattaaattaatttctctgaatggaagcagaaacacacagtgaATATCCTGGTTAGATTCTCCTTCtgcccagtccaggatgaacttgtgcacagagacagtttttcctATGCCAGCGACTCCTTTGGTCAGCACAGTATTTTTCTGACTGTTTTTCCTCagttcagtaaatatatcattgcatttgatcggtttgtcctgtgtttttttaatcttaaaagcATCATCAATCTTCAGAATCTCATGTTCGTGATTGACCTCTTTCATATCTCCTCTGTAATGAACAGATCTGTGTAAACAGCCTTGAGttgtgcttcattttctttgtttccttcaaaaatacatttagctttattcttcatgtttgttttgtgagattcaaaaaagttttgcagctctCCAACAGCAG

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44494 True 1799 lncRNA 0.39 2 20912558 20934912

Neighbor

gene id symbol gene type direction distance location
LOC122343111 NA coding upstream 5832 20902219 ~ 20906726 (+)
LOC122342951 NA coding upstream 112017 20790175 ~ 20800541 (+)
LOC122342964 NA coding upstream 234649 20655215 ~ 20677909 (+)
LOC122343085 LOC107561645,LOC107566978,LOC107748257,LOC107741456 coding upstream 267766 20640142 ~ 20644792 (+)
LOC122342277 LOC107741474 coding upstream 273947 20633884 ~ 20638611 (+)
LOC122342283 NA coding downstream 83240 21018152 ~ 21020872 (+)
LOC122343014 NA coding downstream 104868 21039780 ~ 21044018 (+)
LOC122342958 LOC107566977,LOC107677745 coding downstream 120580 21055492 ~ 21066850 (+)
LOC122342972 NA coding downstream 158541 21093453 ~ 21112328 (+)
LOC122343080 NA coding downstream 221161 21156073 ~ 21161025 (+)
G30003 NA non-coding upstream 29650 20880449 ~ 20882908 (+)
G30005 NA non-coding upstream 127028 20785309 ~ 20785530 (+)
G29947 LOC107709565,LOC107727338,LOC107575420,LOC107569100 non-coding upstream 267023 20645257 ~ 20645535 (+)
G29945 NA non-coding upstream 281229 20630820 ~ 20631329 (+)
G29927 LOC107681551 non-coding upstream 414690 20497097 ~ 20497868 (+)
LOC122343171 NA non-coding downstream 36598 20971510 ~ 20972249 (+)
G30056 NA non-coding downstream 182749 21117661 ~ 21118522 (+)
LOC122343166 NA non-coding downstream 191173 21126085 ~ 21126420 (+)
LOC122343205 NA non-coding downstream 196242 21131154 ~ 21133602 (+)
LOC122343163 NA non-coding downstream 228844 21163756 ~ 21167242 (+)
G29961 NA other upstream 205712 20696672 ~ 20706846 (+)
G29921 NA other upstream 543742 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 565834 20344346 ~ 20346724 (+)
LOC122343063 NA other upstream 869105 20037933 ~ 20043453 (+)
LOC122343071 NA other upstream 1162484 19745734 ~ 19750074 (+)
G30058 NA other downstream 183650 21118562 ~ 21142831 (+)
LOC122342286 LOC107578117 other downstream 234281 21169193 ~ 21174340 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 433731 21368643 ~ 21761181 (+)
G30119 NA other downstream 453281 21388193 ~ 21630120 (+)
G30115 NA other downstream 704628 21639540 ~ 21641756 (+)

Expression


Co-expression Network