LOC122342286 (LOC107578117)


Basic Information

Item Value
gene id LOC122342286
gene name LOC107578117
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21169193 ~ 21174340 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU44553
AGTGTTGCGAACCTATACCCATTACAGCGATAcactttactgttttaaatcaaagcaGATTCAGGCCTGGGATGTCCGATAAGGAAAACAGCGAATCAAACCTGACCGATGGAGCGACTTTCGGAATAATTGCTTTCGGGATGGAAAATCCCCCGGTTGTAAAGATGGAACCGCACGAAAACAGCCATTCAGTGCCGGATGTAAAGACAAAAACCGGCCGGTCCTCCCCTAGACAGAGGCGGgagaataaaataacatAAGGAACTAAAAGGAGATCCTGTCACTCGCCATCAACATGGGATGCCTTTCGTCCAACGAGCAGACGTGAAAAATCAGCCGGAAGAGAAAGATTTCACCTGCTCTGaatgtggaaaaagtttcaGAAACAAGAGGACCCTTAAAGACCACACGGCCATTCACTCGGAAGAGAAAGCGTTCGCCTGCTCcgagtgtggaaagagtttcaaacTGAAGAGGATCCTCAAGCAACACGCGAAAATTCACgccggagagaaaccgttcgCCTGCTCCGAGTGCGGGAGAGGCTTCAGAGTGAAGAACATCCTCAAGCAGCACATGAaggttcacaccggagagaaaccgttcgCCTGCTCCGAGTGCGGGAAAGGCTTCACGGTGAAACAGAACCTCAAGTACCACATGAGGaatcacaccggagagaaacccttCACCTGCCCCGAGTGCGGAAAGAGCTTCATTGTGAACAAGAGTCTTAAACAGCACATGAAAGTTCACACTCGAGAGAAACTTTTCCCCTGCGCCGAGTGCGGACGGAGTTTCGGTTTCAAACAGAGCCTGGAGAAACACATGagaatccacaccggagagaagccgtacGTATGCCCCGAGTGCGGAAACAGCTTCAGAGACCGGCAGAACTTTAACGT
>XM_043236083.1
GTGCTCCGAAGCCcgattcaaaacaaaagattcATAGTTCCGAAGCTTCGTGAAGAAGTGTTGCGAACCTATACCCATTACAGCGATAcactttactgttttaaatcaaagcaGATTCAGGCCTGGGATGTCCGATAAGGAAAACAGCGAATCAAACCTGACCGATGGAGCGACTTTCGGAATAATTGCTTTCGGGATGGAAAATCCCCCGGTTGTAAAGATGGAACCGCACGAAAACAGCCATTCAGTGCCGGATGTAAAGACAAAAACCGGCCGGTCCTCCCCTAGACAGAGGCGGgagaataaaataacataTCAGAAGGAACTAAAAGGAGATCCTGTCACTCGCCATCAACATGGGATGCCTTTCGTCCAACGAGCAGACGTGAAAAATCAGCCGGAAGAGAAAGATTTCACCTGCTCTGaatgtggaaaaagtttcaGAAACAAGAGGACCCTTAAAGACCACACGGCCATTCACTCGGAAGAGAAAGCGTTCGCCTGCTCcgagtgtggaaagagtttcaaacTGAAGAGGATCCTCAAGCAACACGCGAAAATTCACgccggagagaaaccgttcgCCTGCTCCGAGTGCGGGAGAGGCTTCAGAGTGAAGAACATCCTCAAGCAGCACATGAaggttcacaccggagagaaaccgttcgCCTGCTCCGAGTGCGGGAAAGGCTTCACGGTGAAACAGAACCTCAAGTACCACATGAGGaatcacaccggagagaaacccttCACCTGCCCCGAGTGCGGAAAGAGCTTCATTGTGAACAAGAGTCTTAAACAGCACATGAAAGTTCACACTCGAGAGAAACTTTTCCCCTGCGCCGAGTGCGGACGGAGTTTCGGTTTCAAACAGAGCCTGGAGAAACACATGagaatccacaccggagagaagccgtacGTATGCCCCGAGTGCGGAAACAGCTTCAGAGACCGGCAGAACTTTAACGTTCACATGAGGATTCACACCGGCGAGAGGCCTTACGTCTGCCCTCGCGGCAAGCGTTGCAAGCTCAGCCAGAACCTCCAGAATCACATGAGAATCCACACGGGAGAAAAGCCTTTCGTCTGCCCTCTGTGCGGGAAGAGCTGCAGGATGAGGCAGAACCTCGACAGGCACATGAAAACCCACACCGGAGAGCGGCCTTACTCCTGCCCCGAGTGCGAGAAGAGTTTCACCATGAAACAGCGCCTCACCAGgcacatgaggatccacacgGGACAGAGGTCGAAGCCGGCAGCCGTGGAATACGTGATACAATCCCGTGAAAACAGTCTCAGCGCAGATGATCCAGATATACAGACGAAAACCCGGCAGTCCTCACCTGGTGAAGAGTGGGAGAATAAAACACAGCATCTGAGGGAACTCAAAGTAGCTTCTTTCATTTGCCGTCAATGTGGCATGCGTTTCCTTCAACAAGCCGGTCTTCAGAAGCATACgagagttcacaccggagaaaaGCCGTTCACCTGCCCTCAGTGCGGGAAGCGGTTCACGCAGCAAAGCCAACTAAAATGTCACATAAGAAGTCACACCGGAGAGAGGCCGTTCACCTGCCCTCAGTGCGAAAAGAGTTTCACGGTGAAGCAACACCTTAAGAATCACATTCGAACTCACACCGGAGAAAAACCTTTCGCTTGCCCTCGGTGCGGAAAGAGCTTCACGGTGAACTGGAACCTTGAGAGTCACATGcgaattcacaccggagagaaacctttcGGCTGCCCTCGGTGCGGAAAGAGATTTGCACAACAAGGGCAACTTAAATGCCACGTGAGAagccacaccggagagaagcccttcaGCTGCGCTCGGTGCGAAAAGAGTTTCACGGTGAAGCGAAATCTGGAGATTCACGCGACGGTTCACACCGGAGAAAAGCCcttcagctgctctcagtgtggaacCGGTTTCACGGTGAAGCGAAACCTCGTCGCTCACATgaggattcacaccggagaaaaGCCCTTCGCCTGCCCCGAATGCGGAAAGGGTTTCACGGTGAAGCGAAACCTCGAGAGACACGTGAGAGTTCACACCGGGGAGAAACCCTTCGCCTGCCCCGAATGTGGAAAGAGCTTCACGGTGAAACAAAATCTGGACAGTCACGTGAGAGTTCACACCGGCGAAAGGCCCTTCGCCTGCCCCCAGTGTAAAAAGGgttttaaagtgaaacaaaGCCTTGCGGGTCACATgaggattcacaccggagacAAGCCCTTCGCCTGCCCCGAATGCGGAAAGGGTTTCGCGGTGAAAAGAAACCTCGAGGggcacacacaaactcactccgGAGAGAAACCCTTCAGCTTCCTCAAGTGTGGAAAGCGTTTCACACAACGGGGACGACTGAAGTGTCACATGAGGATTCACGCTGGAGAAACgcctcagtgtggaaagagtttcgaAACCTCGATGTTCACATGACAGTGCACGCTTGAGAGAAGACTTCTGCTTGCTTTGAGTGCGAAAAGAGTTTCGTAGTGAAACATAAGCATGATATTCTCGTTAGAATAAAGTCTTTATTagtaatcttta

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF26.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44553 False 908 TUCP 0.50 2 21169249 21170595
XM_043236083.1 True 2557 mRNA 0.51 5 21169193 21174340

Neighbor

gene id symbol gene type direction distance location
LOC122342285 LOC107725790,LOC107656690 coding upstream 1232 21167249 ~ 21167961 (+)
LOC122343080 NA coding upstream 8168 21156073 ~ 21161025 (+)
LOC122342972 NA coding upstream 56865 21093453 ~ 21112328 (+)
LOC122342958 LOC107566977,LOC107677745 coding upstream 102343 21055492 ~ 21066850 (+)
LOC122343014 NA coding upstream 125175 21039780 ~ 21044018 (+)
LOC122342287 LOC107722090,LOC107694763,LOC107585758,LOC107668179,LOC107574018,LOC107573797,LOC107697810,LOC107566573 coding downstream 3215 21177555 ~ 21182761 (+)
LOC122342986 LOC107563545,LOC107667978,LOC107741456 coding downstream 7897 21182237 ~ 21186135 (+)
LOC122342966 LOC107563536 coding downstream 48230 21222570 ~ 21230104 (+)
LOC122342289 LOC107685875,LOC107749047,LOC107728228 coding downstream 117972 21292312 ~ 21305636 (+)
LOC122343117 NA coding downstream 203198 21377538 ~ 21379639 (+)
LOC122343163 NA non-coding upstream 1951 21163756 ~ 21167242 (+)
LOC122343205 NA non-coding upstream 35591 21131154 ~ 21133602 (+)
LOC122343166 NA non-coding upstream 42773 21126085 ~ 21126420 (+)
G30056 NA non-coding upstream 50671 21117661 ~ 21118522 (+)
G30024 NA non-coding upstream 193415 20910154 ~ 20975778 (+)
G30077 NA non-coding downstream 73847 21248187 ~ 21248425 (+)
G30090 LOC107749046 non-coding downstream 101770 21276110 ~ 21301007 (+)
G30085 NA non-coding downstream 137215 21311555 ~ 21337024 (+)
G30104 NA non-coding downstream 158905 21333245 ~ 21721910 (+)
G30110 LOC107718524,LOC107563870 non-coding downstream 195082 21369422 ~ 21374537 (+)
G30058 NA other upstream 26362 21118562 ~ 21142831 (+)
G29961 NA other upstream 462347 20696672 ~ 20706846 (+)
G29921 NA other upstream 800377 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 822469 20344346 ~ 20346724 (+)
LOC122343063 NA other upstream 1125740 20037933 ~ 20043453 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 194303 21368643 ~ 21761181 (+)
G30119 NA other downstream 213853 21388193 ~ 21630120 (+)
G30115 NA other downstream 465200 21639540 ~ 21641756 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 1057130 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 1122557 22296897 ~ 22305148 (+)

Expression


Co-expression Network