LOC122342301 (LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545)


Basic Information

Item Value
gene id LOC122342301
gene name LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21368643 ~ 21761181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU44625
CAGGGACATAATTGGGAGAACAAAAACAGGTATTGTCATGGCAATCCAGCACAATACAAGTGAAATCCAAAACCGAAAGTATTTCTGTCAGGTTTCTCTGTGGTTCAGTCATGTGCACAAGCAGAAgactttctgtttctgtttgacCTGACTGGGACCTGAAGTCACGATTTTGACATTCTGTACGAGGGCAAGATGACAGATGAATTCATCGCAATAGAGTCGGACCTCATCGAGTTCGATGAGGACATGGAAGAACTGTCGGCACCTGAGTTTGTGTGTCACTGTTGCTACGATGTCCTCGTAGATCCTACTACGCTTAACTGTGGCCATAGTTTCTGTCGCCATTGTCTGGCAGAATGGTTGCATTCCTCTCAACGGAACGAGTGTCCAGAATGCAGAGAGAGGTGGCAGGCTTTCTCCCAGAATTAACAGGTGGCAGCTGTCTTTCCCAGAATTAACATCCTCCTTCGGGATGCAGCGGAGAAGAAGTTTCCAGATAAGATAAAGAGACGGAGGACGGCTCTCCAGAGTGACCAACGGTTCCATTATTTTCTCCAGATATTCCAAAAGTATGGGCAGGTACTGAAGCAACAAATTCCTGTATCACAAGGCCTAGAACAAGCTATACAATACAGCTTTTGTTCTGGAGTCATGGTGGCATTGATGTGCATGGGGGTTATATTGTTTCGATATTACTGGGTTAGCACTGAATCCGATTATGACATCTTGGTTCAGAAGCCAATCAACAGGTGGAAACCCCATGATGTCATTCTGTGGGTGGAGCATCTGGGTCCCTGGAGCAATCAGTACAGAGAAACGTTCCacaaagcacaaattaatgGAAGtttgttggCTCATCTCAGGGATGAAGAACTGTCTGCTTTTCCGTTTCATGTTAAGAATCCATCGCACAGACAGGTCATTCTGGAGGAAATCCGGAAAATCAAAGACCACAAAGTCAAACTACCCCAAAACCTCTGGGAGTACAAGGCTGCAAATTTAGGAAAATCGCTGTTCCTCCAGTTTGGCCTGAGAGAATTTCCACGTGTCACTTTCCTCTACTTGTACCTGTTTGATTATGAAGACACCTTTCTACCCTTCATACACACCTGCTGTCCTGCATACATAACGAATGCAATGCAGGATATCCCACCTGACCACGTACCGcaGGAGCCAAGCCAACGTCAGTGGGTGGAGTTTCGTGTGAAGGTTTGTCTGATGCCCTATCTGCTACTGGTTGACTTTGCTTGGCAATGGCTGAGCGTTCATTGCTGGATATCATGGATTGTGATTGGTAATTCCATGGTGATGTCAGTAATGGAGTATGTTTATGTCTGGACACTGTGGAGAAGAAGA
>XM_043236096.1
ATGCAGAGTAAGAGAGGACATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCAGTGGAATCCAGTCAAAATCTGCTCAAAGGCCTGATCACACAGACTGAAGACACCACAGAGAGCATCAGAAATCTAAGTGCACACATTAAAGAATTACAACAACAGGACATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAACTCAAGGATAATTCATTATATGAGGAAATCCAGAGTTGCctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTCAGTACTGCTGATGTCAGAGAAGGTGCTGGATGAGTTCAAGCCAAAGAGGTTCACATCAGAAGAATCAGACTACAGGAGACTCATTCCAGCtGTATTGTGTAGAGATAGTGTGTGTGGACGCTattactgggagactgagtggagTGGGCTTGTGGagatatcagtgtcatataagaacatcagcaggaagaGACCGGCATTGCTTGAACCTGTAGATGCTGTTAAAAAGAGTTTTCTGTTCTTTCTAAACTCAGTTCTGTACGAGGGCAAGATGACAGATGAATTCATCGCAATAGAGTCGGACCTCATCGAGTTCGATGAGGACATGGAAGAACTGTCGGCACCTGAGTTTGTGTGTCACTGTTGCTACGATGTCCTCGTGGCAGCTGTCTTTCCCAGAATTAACATCCTCCTTCGGGATGCAGCGGAGAAGAAGTTTCCAGATAAGATAAAGAGACGGAGGACGGCTCTCCAGAGTGACCAACGGTTCCATTATTTTCTCCAGATATTCCAAAAGTATGGGCAGGTTATATTGTTTCGATATTACTGGGTTAGCACTGAATCCGATTATGACATCTTGGTTCAGAAGCCAATCAACAGGTGGAAACCCCATGATGTCATTCTGTGGGTGGAGCATCTGGGTCCCTGGAGCAATCAGTACAGAGAAACGTTCCacaaagcacaaattaatgGAAGtttgttggCTCATCTCAGGGATGAAGAACTGTCTGCTTTTCCGTTTCATGTTAAGAATCCATCGCACAGACAGGTCATTCTGGAGGAAATCCGGAAAATCAAAGACCACAAAGTCAAACTACCCCAAAACCTCTGGGAGTACAAGGCTGCAAATTTAGGAAAATCGCTGTTCCTCCAGTTTGGCCTGAGAGAATTTCCACGTGTCACTTTCCTCTACTTGTACCTGTTTGATTATGAAGACACCTTTCTACCCTTCATACACACCTGCTGTCCTGCATACATAACGAATGCAATGCAGGATATCCCACCTGACCACGTACCGcaGGAGCCAAGCCAACGTCAGTGGGTGGAGTTTCGTGTGAAGGTTTGTCTGATGCCCTATCTGCTACTGGTTGACTTTGCTTGGCAATGGCTGAGCGTTCATTGCTGGATATCATGGATTGTGATTGGTAATTCCATGGTGATGTCAGTAATGGAGTATGTTTATGTCTGGACACTGTGGAGAAGAAGATGA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44625 False 1359 TUCP 0.46 8 21368643 21761178
XM_043236096.1 True 1521 mRNA 0.45 9 21743635 21761181

Neighbor

gene id symbol gene type direction distance location
LOC122342289 LOC107685875,LOC107749047,LOC107728228 coding upstream 63007 21292312 ~ 21305636 (+)
LOC122342966 LOC107563536 coding upstream 138539 21222570 ~ 21230104 (+)
LOC122342986 LOC107563545,LOC107667978,LOC107741456 coding upstream 182508 21182237 ~ 21186135 (+)
LOC122342287 LOC107722090,LOC107694763,LOC107585758,LOC107668179,LOC107574018,LOC107573797,LOC107697810,LOC107566573 coding upstream 185882 21177555 ~ 21182761 (+)
LOC122342285 LOC107725790,LOC107656690 coding upstream 200682 21167249 ~ 21167961 (+)
LOC122343035 NA coding downstream 47975 21809156 ~ 21814437 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding downstream 80000 21841181 ~ 21842230 (+)
LOC122343067 NA coding downstream 342137 22103318 ~ 22104932 (+)
LOC122343041 zbtb24,LOC107736039 coding downstream 344055 22105236 ~ 22107457 (+)
LOC122342312 NA coding downstream 642872 22404053 ~ 22405822 (+)
G30085 NA non-coding upstream 31619 21311555 ~ 21337024 (+)
G30090 LOC107749046 non-coding upstream 67636 21276110 ~ 21301007 (+)
G30077 NA non-coding upstream 120218 21248187 ~ 21248425 (+)
LOC122343163 NA non-coding upstream 201401 21163756 ~ 21167242 (+)
LOC122343205 NA non-coding upstream 235041 21131154 ~ 21133602 (+)
G30205 NA non-coding downstream 380163 22141344 ~ 22255433 (+)
G30206 NA non-coding downstream 401457 22162638 ~ 22240294 (+)
G30212 NA non-coding downstream 413774 22174955 ~ 22252519 (+)
G30226 NA non-coding downstream 489254 22250435 ~ 22251792 (+)
G30233 NA non-coding downstream 512630 22273811 ~ 22280970 (+)
LOC122342286 LOC107578117 other upstream 194303 21169193 ~ 21174340 (+)
G30058 NA other upstream 225812 21118562 ~ 21142831 (+)
G29961 NA other upstream 661797 20696672 ~ 20706846 (+)
G29921 NA other upstream 999827 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 1021919 20344346 ~ 20346724 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 470289 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 535716 22296897 ~ 22305148 (+)
LOC122343019 LOC107705900 other downstream 900645 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 1016802 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 1367925 23129106 ~ 23130189 (+)

Expression


Co-expression Network