LOC122342310 (LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424)


Basic Information

Item Value
gene id LOC122342310
gene name LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22296897 ~ 22305148 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU44785
GCCGGGTCTTCAGCTGTGGAGCAGAAAGGCACTTTCTTTTTCATAGTCAGGGTTGGAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGCTTAGTTCATGAGAAGAGATCAGAAGCAgagcccagctgtgtgtctatgaagagtgACTGGTCTATGATTGAGCCAATGAAGTTTAAGAGTGATTCACAGCCTGGACTCAGttcagttcatcagaagagatcagaagcagagtccagctgtgtgtctattAAGAGAGAGACATCTTTGATTCAGTCTTTAGATTTTAAGAGAGGAGATACACGGCCTGTGTTCTCAG
>XM_043236103.1
GCCGGGTCTTCAGCTGTGGAGCAGAAAGGCACTTTCTTTTTCATAGTCAGGGTTGGAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGCTTAGTTCATGAGAAGAGATCAGAAGCAgagcccagctgtgtgtctatgaagagtgACTGGTCTATGATTGAGCCAATGAAGTTTAAGAGTGATTCACAGCCTGGACTCAGttcagttcatcagaagagatcagaagcagagtccagctgtgtgtctattAAGAGAGAGACATCTTTGATTCAGTCTTTAGATTTTAAGAGAGGAGATACACGGCCTGTGTTCTCAGGTATAACATTTCTtcatgAAGTCCTCAACACATTTAGATCAAATCTGCAGAAGAGgtttgagtgtctgtgtgagggaACAGCGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACAGAGCCATAAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGGGActcgctggcattggaaaaacagtctctgtgcagaagttcatcctCGACTGGGCCGAAGGGAAAGATAATCAGGATGTCCAGCTCTtatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGACTTTCAGATCTTCTTCATGTCTTTTTCCCTGAaactaaagaaatggaaatatccagtgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGCGAAGTGAAACTGTATAATATAGCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatcttcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTACGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGTCACAGAAGGAGAAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAAGATCATCTCACACCTGAAGTCCTCCAGGAGTCTCttcatcatgtgtcacatcccaGTCTTCGGCTGGATCTCAACCGCTGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatcctTCAGACCAACATCAAACGTGAGAAGGAGTATGAGGAGAAGGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTCCAGCAGCTAGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTACAGAGGAAAGTGTTCTGCTTCGTTCATCTGAGCCTGCAGGAACATCTAGCAGCTCTATATGTGCACCACTCTTTTACAGTCaacaaaatcaatgcatttgATGAAATCAAACAAAGTCTGTTGTCTAAGATTTTGAACCAGATGAAGTATAATTCATTATTGGAGCTGCATCAGAGTGCTTTAGAAATTGCCTTAAAGAGTAAGAATGGACATCTGGACCTTTTCCTGCGGTTCCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcttctacaacaaagagaaaacagttCAGTTCATTAAACAGAAGATCAGGGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAAAAATAAGAGAAATCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATATTTTTGATCTAAAACAGTTTATTGGAGAACAACACACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATGCAGATCAGTTCGGCTATGTAACTACAAACTCACTGCTCAATCTTGTggaagtttgtcttcagttttacaattctcaaactcaaacagcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgaaggactgaagagt

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44785 False 356 TUCP 0.44 4 22296897 22301519
XM_043236103.1 True 2305 mRNA 0.44 6 22296897 22305148

Neighbor

gene id symbol gene type direction distance location
LOC122343041 zbtb24,LOC107736039 coding upstream 189440 22105236 ~ 22107457 (+)
LOC122343067 NA coding upstream 191965 22103318 ~ 22104932 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding upstream 454667 21841181 ~ 21842230 (+)
LOC122343035 NA coding upstream 482460 21809156 ~ 21814437 (+)
LOC122343144 NA coding upstream 554592 21741323 ~ 21742305 (+)
LOC122342312 NA coding downstream 98905 22404053 ~ 22405822 (+)
LOC122343018 LOC107705900 coding downstream 128906 22434054 ~ 22446278 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding downstream 243469 22548617 ~ 22561763 (+)
LOC122342965 NA coding downstream 307967 22613115 ~ 22621886 (+)
LOC122343101 NA coding downstream 380554 22685702 ~ 22689679 (+)
G30233 NA non-coding upstream 15927 22273811 ~ 22280970 (+)
G30205 NA non-coding upstream 41464 22141344 ~ 22255433 (+)
G30212 NA non-coding upstream 44378 22174955 ~ 22252519 (+)
G30226 NA non-coding upstream 45105 22250435 ~ 22251792 (+)
G30206 NA non-coding upstream 56603 22162638 ~ 22240294 (+)
LOC122343188 si:dkey-71l4.4,LOC107667913,LOC107575399,LOC107574515,LOC107698614,LOC107671223,LOC107663329,LOC108183671,LOC107574820 non-coding downstream 1647 22306795 ~ 22311420 (+)
G30480 NA non-coding downstream 35014 22340162 ~ 22344814 (+)
LOC122343186 si:rp71-7l19.2,LOC107575109,LOC107690967,LOC107575399,LOC107575457,LOC107575637,LOC107688608,LOC107665206,LOC107671223,LOC107719059 non-coding downstream 112779 22417927 ~ 22419692 (+)
G30526 NA non-coding downstream 200107 22505255 ~ 22506192 (+)
G30528 LOC107574372,LOC107655767,LOC107710146,LOC107574376,LOC107571418,LOC107574588 non-coding downstream 227267 22532415 ~ 22533032 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other upstream 64973 22231470 ~ 22231924 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other upstream 535716 21368643 ~ 21761181 (+)
G30115 NA other upstream 655141 21639540 ~ 21641756 (+)
G30119 NA other upstream 666777 21388193 ~ 21630120 (+)
LOC122342286 LOC107578117 other upstream 1122557 21169193 ~ 21174340 (+)
LOC122343019 LOC107705900 other downstream 356678 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 472835 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 823958 23129106 ~ 23130189 (+)
G30632 NA other downstream 852411 23157559 ~ 23159756 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other downstream 858547 23163695 ~ 23168007 (+)

Expression


Co-expression Network