G30599 (LOC107561645)


Basic Information

Item Value
gene id G30599
gene name LOC107561645
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22807988 ~ 23249868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45303
TGTGTGATCAGGCCCTTAAGCAGGGGTTGACTGAAGCTTCATCTGAGATATTGtacttgttgtgtttttgtttaatgtattcACTTATTCTCATGATGCTCTCTGTAGtgtcttcagtgtgtgtgatcAGGCCCTTAAGCAGGATTTGACTGGATTTCAGTGAAATGCCCAACAGAAACCGCAGGAACAGATCCAGATGTCCTCTCTGACTCTTCATGGCTTTTTCAATGGCCTTCTGTAGTAACTTCTCTAATGTGACATTTTCTTCTGGCCcatcaaagaaaaactgaagctCTTGTATGTTCTTGTTCAGATAACAGAGGAACACGTGGACTGCAGCGAAGAACTCTTGAACACTCAGATGCACAAAGGTGAAAACCTTTGCTCCATGAAGTCTGCGTtcccttttaaaaatctcaGCGATCATTCCTGTGAACTCAGTTTCTTTACTCGCATTAATACCACATGCTTTTAAATCTTCCTTatagaacacaatgttttccttCTTCAGCTGTTCGAATGCTAGCTTGGCTAACTTCAAAATGATTtctctatttaattttaagtgcTCTGAACATTCTCTTTCATCTTGTTCATCGAATTTCTGGTTCTTCATATCCAACAGTATTAGCAAAAAGtcaatgtacatttcagtgagtGTTGTGCTTATGTTCTCTTCATTGTTCTCTGTGAGAATATCCTGAAGTACTGTGGCTGTGATCCAGCAGAATACAggaatgtggcacatgatgtagagacTACGCGACGTcttaatgtgtgagatgattctggaggACAGACTTTGATCTTTCATCCTCTTTGTGAAGTACTGCTCCTTCTGTTGGTCAGTAAATCCTCGAACCTCTGTGAACAAACCTACATACTGAGGAGGAATcagattggctgctgctggtcgtgAAGTTATCCACACAAGAGCTGAATGAAGCAAAGTCCCTTTGACCAGACTTGTAAAGAGCACATCTACAGATGCTTTTTTCTCAACAGTGTTCAATgatctacttttaaaatttagaGTCAGGCGACTctcatcaagtccatcaaatataaatactagCTTACATTCCTTATATAGTTTTGATTTCTCCAGGTCTTTCAGTTCAGGATAAAATTCTAACAGAAGCTCATGGAGACTGAActctttatttatcattaagttaatctctctgaatggaagcAGGAATACACAGTTTATatcctgattggcttttccttctgcccagtccaggatgaacttgtgcacagagactgtttttccaatgccagcaaCTCCCTTGGTCAGCACagtgtttttctcattatttttcctcagttcagtaaatatatcattacatttgactggtttttcctgtgtttttctgtgctttAAAGCATTATCAATCTTAAGAATTTCATGTTCGTGATTGACATCTTCCATATCTCcctctgtgatgaacagatctgtgtaaacagccttgagttgtgcttcattttctctgctgccctcaaaaatatattctaccttcttcttcatgtttgttttgtgagtttcaa

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45303 True 1551 lncRNA 0.39 2 22807988 23249868

Neighbor

gene id symbol gene type direction distance location
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 59368 22739960 ~ 22748620 (+)
LOC122342996 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 101494 22695800 ~ 22706494 (+)
LOC122343101 NA coding upstream 118309 22685702 ~ 22689679 (+)
LOC122342965 NA coding upstream 186102 22613115 ~ 22621886 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding upstream 246225 22548617 ~ 22561763 (+)
LOC122343152 NA coding downstream 102059 23351927 ~ 23375871 (+)
LOC122342330 LOC101883771,LOC101885620,LOC108191338 coding downstream 363610 23613478 ~ 23614930 (+)
LOC122342945 LOC107563545 coding downstream 383930 23633798 ~ 24144571 (+)
LOC122343046 NA coding downstream 835091 24084959 ~ 24091352 (+)
kdm5a kdm5a,LOC107710764 coding downstream 844012 24093880 ~ 24112912 (+)
LOC122343204 NA non-coding upstream 256638 22550101 ~ 22551350 (+)
LOC122343169 NA non-coding upstream 264157 22542511 ~ 22543831 (+)
LOC122343193 NA non-coding upstream 266503 22540384 ~ 22541485 (+)
G30528 LOC107574372,LOC107655767,LOC107710146,LOC107574376,LOC107571418,LOC107574588 non-coding upstream 274956 22532415 ~ 22533032 (+)
G30526 NA non-coding upstream 301796 22505255 ~ 22506192 (+)
G30652 NA non-coding downstream 13729 23263597 ~ 23264466 (+)
G30653 NA non-coding downstream 14665 23264533 ~ 23264741 (+)
G30654 NA non-coding downstream 15998 23265866 ~ 23266302 (+)
G30658 NA non-coding downstream 24637 23274505 ~ 23282812 (+)
G30674 NA non-coding downstream 150188 23400056 ~ 23539037 (+)
LOC122342317 NA other upstream 27849 22777983 ~ 22780139 (+)
LOC122343019 LOC107705900 other upstream 125276 22661826 ~ 22682712 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other upstream 502840 22296897 ~ 22305148 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other upstream 576064 22231470 ~ 22231924 (+)
G30115 NA other upstream 1166232 21639540 ~ 21641756 (+)
LOC122342976 usp15,LOC107685889 other downstream 867421 24117289 ~ 24131487 (+)
LOC122342990 NA other downstream 883182 24133050 ~ 24141446 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other downstream 1204402 24454270 ~ 24466400 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other downstream 1215586 24465454 ~ 24471450 (+)
LOC122343159 NA other downstream 1386484 24636352 ~ 24638654 (+)

Expression


Co-expression Network