LOC122342321 (LOC107741609,LOC107575420,LOC107710255)


Basic Information

Item Value
gene id LOC122342321
gene name LOC107741609,LOC107575420,LOC107710255
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23163695 ~ 23168007 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU45341
TCGAACTGTCATTATTGCTTCCTGATGTGGAAATGTACATGGACCTAATGAAGAAACCAAGGACATACTGAGAACTTGTCTAGTAGCAGAACAACCTGGTCAGTCGTGAGCTGTGGAGCGCAAAGTCACTTCCTTATTCATctgTGAGTTGGTGAAGGAAGATGGCGTTTGTCAAGGAGCTGCTCGTGGGGTCACTGAAGGGGCTGGTAGAAGCTGAACTAAAGGAGTTTCACTGGCGCCTAATGAATACATATCATAAGCATATAACAAAGTCTGAATTGGAGAAGGCAGATATATTTGACACAGTAGATAAGATGGTGGTGTGTTTTGGACCAGAAGAAGCTGTGGAGGTCATGGTAGATATCCTGAGAAAGATGAACCAAAATGATCTGGCTGAACAGTTGGTGAAAGAACACACGCAAGctCAGACGGAGGGCAATATGAATATATCTGCTGCTGTTGGAGagcagcaaaactgttttgaaactcacaaaacaaacatgaagaagaaggtagaatatatttttgagggcagcagagaaaatgaagcacaactcaaggctgtttacacagatctgttcatcacagaggGAGATATGGAAGATGTCAATCACGAACATGAAATTCTTAAGATTGATAATGCTTTaaagcacagaaaaacacaggaaaaaccagtcaaatgtaatgatatatttactgaactgaggaaaaataatga
>TU45342
TCGAACTGTCATTATTGCTTCCTGATGTGGAAATGTACATGGACCTAATGAAGAAACCAAGGACATACTGAGAACTTGTCTAGTAGCAGAACAACCTGGTCAGTCGTGAGCTGTGGAGCGCAAAGTCACTTCCTTATTCATctgTGAGTTGGTGAAGGAAGATGGCGTTTGTCAAGGAGCTGCTCGTGGGGTCACTGAAGGGGCTGGTAGAAGCTGAACTAAAGGAGTTTCACTGGCGCCTAATGAATACATATCATAAGCATATAACAAAGTCTGAATTGGAGAAGGCAGATATATTTGACACAGTAGATAAGATGGTGGTGTGTTTTGGACCAGAAGAAGCTGTGGAGGTCATGGTAGATATCCTGAGAAAGATGAACCAAAATGATCTGGCTGAACAGTTGGTGAAAGAACACACGCAAGTGAGgaattctctctttttctctctcacagctCAGACGGAGGGCAATATGAATATATCTGCTGCTGTTGGAGagcagcaaaactgttttgaaactcacaaaacaaacatgaagaagaaggtagaatatatttttgagggcagcagagaaaatgaagcacaactcaaggctgtttacacagatctgttcatcacagaggGAGATATGGAAGATGTCAATCACGAACATGAAATTCTTAAGATTGATAATGCTTTaaagcacagaaaaacacaggaaaaaccagtcaaatgtaatgatatatttactgaactgaggaaaaataatga
>XM_043236112.1
ACGTGAAAGCAGAAGTTGTACATGTTGTGTTCACCCTTGactgtgtgatttttttcattttgaaaatctgaTCATCGAACTGTCATTATTGCTTCCTGATGTGGAAATGTACATGGACCTAATGAAGAAACCAAGGACATACTGAGAACTTGTCTAGTAGCAGAACAACCTGGTCAGTCGTGAGCTGTGGAGCGCAAAGTCACTTCCTTATTCATctgTGAGTTGGTGAAGGAAGATGGCGTTTGTCAAGGAGCTGCTCGTGGGGTCACTGAAGGGGCTGGTAGAAGCTGAACTAAAGGAGTTTCACTGGCGCCTAATGAATACATATCATAAGCATATAACAAAGTCTGAATTGGAGAAGGCAGATATATTTGACACAGTAGATAAGATGGTGGTGTGTTTTGGACCAGAAGAAGCTGTGGAGGTCATGGTAGATATCCTGAGAAAGATGAACCAAAATGATCTGGCTGAACAGTTGGTGAAAGAACACACGCAAGctCAGACGGAGGGCAATATGAATATATCTGCTGCTGTTGGAGagcagcaaaactgttttgaaactcacaaaacaaacatgaagaagaaggtagaatatatttttgagggcagcagagaaaatgaagcacaactcaaggctgtttacacagatctgttcatcacagaggGAGATATGGAAGATGTCAATCACGAACATGAAATTCTTAAGATTGATAATGCTTTaaagcacagaaaaacacaggaaaaaccagtcaaatgtaatgatatatttactgaactgaggaaaaataatgagaaaaaacacTcagcagccaatctgATTCCTCCTCAGTATGTAGGTTTGTTCACAGAGGTTCGAGGATTTACTGACCAACAGAAGGAGCAGTACTTCACAAAGAGGATGAAAGATCAAAGTCTGTcctccagaatcatctcacacattaagACGTCGCGTAgtctctacatcatgtgccacattccTGTATTCTGCTGGATCACAGCCACAGTACTTCAGGATATTCTCACAGAGAACAATGAAGAGAACATAAGCACAACactcactgaaatgtacattgaCTTTTTGCTAATACTGTTGGATATGAAGAACCAGAAATTGATGAACAAGATGAAAGAGAATGTTCAGAgcacttaa

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45341 False 718 TUCP 0.41 4 23163769 23167257
TU45342 False 748 TUCP 0.41 4 23163769 23167257
XM_043236112.1 True 1150 mRNA 0.40 5 23163695 23168007

Neighbor

gene id symbol gene type direction distance location
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 415075 22739960 ~ 22748620 (+)
LOC122342996 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 457201 22695800 ~ 22706494 (+)
LOC122343101 NA coding upstream 474016 22685702 ~ 22689679 (+)
LOC122342965 NA coding upstream 541809 22613115 ~ 22621886 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding upstream 601932 22548617 ~ 22561763 (+)
LOC122343008 LOC107575457 coding downstream 148 23168155 ~ 23183546 (+)
LOC122343131 NA coding downstream 58204 23226211 ~ 23229732 (+)
LOC122343152 NA coding downstream 183920 23351927 ~ 23375871 (+)
LOC122342330 LOC101883771,LOC101885620,LOC108191338 coding downstream 445471 23613478 ~ 23614930 (+)
LOC122342945 LOC107563545 coding downstream 465791 23633798 ~ 24144571 (+)
G30628 NA non-coding upstream 20616 23066254 ~ 23143079 (+)
G30637 LOC107741456,LOC107727338,LOC107685875,LOC107561645,LOC107563546,LOC107569100,LOC107670352 non-coding upstream 31990 23131314 ~ 23131705 (+)
G30624 NA non-coding upstream 37172 23006974 ~ 23126523 (+)
G30607 NA non-coding upstream 293992 22853481 ~ 22869703 (+)
G30609 NA non-coding upstream 302125 22858290 ~ 22861570 (+)
LOC122343191 NA non-coding downstream 19309 23187316 ~ 23193862 (+)
G30652 NA non-coding downstream 95590 23263597 ~ 23264466 (+)
G30653 NA non-coding downstream 96526 23264533 ~ 23264741 (+)
G30654 NA non-coding downstream 97859 23265866 ~ 23266302 (+)
G30658 NA non-coding downstream 106498 23274505 ~ 23282812 (+)
G30632 NA other upstream 3939 23157559 ~ 23159756 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other upstream 33506 23129106 ~ 23130189 (+)
LOC122342317 NA other upstream 383556 22777983 ~ 22780139 (+)
LOC122343019 LOC107705900 other upstream 480983 22661826 ~ 22682712 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other upstream 858547 22296897 ~ 22305148 (+)
LOC122342976 usp15,LOC107685889 other downstream 949282 24117289 ~ 24131487 (+)
LOC122342990 NA other downstream 965043 24133050 ~ 24141446 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other downstream 1286263 24454270 ~ 24466400 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other downstream 1297447 24465454 ~ 24471450 (+)
LOC122343159 NA other downstream 1468345 24636352 ~ 24638654 (+)

Expression


Co-expression Network